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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109487789
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNRTVCPGF VVLWPNDHGR LTQQPMGICI SFWLCAALRC VRFVSLFIVP VVCPRVSPNL  60
   61 CGSRSLPLGS VVSVEGQVVT ATLNCLDHVS WRYFSKHIPM ACVFPQTCPS CGITFAPKSE 120
  121 AGAEGGAVQN GCQDEPKAST KASGGPNSKT QNGLLSPPAE EKLTNSQTSL CEILQEKGRW 180
  181 AGVSLDQSAL LPLRFKNIRE KTDAHFVDVI KEDSLMKDYF FKPPISQFSL NFLDQELEQS 240
  241 YRASYQEEVI KNSPVKTFAS ATFSSLLDVF LSTTVFLILS ITCFLKYGAT ATPPPPAALA 300
  301 VFGADLLLEV LSLIVSIRMV FFLEDVLTCT KRLLEWIAGW LPRHCIGAIL VSLPALAVYS 360
  361 HITSEFETNI NFTMLTGSAV LVAVVHYCNF CQLSSWMRSS LATLVGAGPL LLLYISLCQD 420
  421 SSIVMSPLDT AQNFSASERS PCNSSVLQDG RRPASLIGKE LILTFFLLLL LVWFLNREFE 480
  481 VSYRLHYHGD VEADLHRTKI QSMRDQADWL LRNIIPYHVA EQLKVSQTYS KNHDSGGVIF 540
  541 ASIVNFSEFY EENYEGGKEC YRVLNELIGD FDELLSKPDY NSIEKIKTIG ATYMAASGLN 600
  601 TAQCQEGGHP QEHLRILFEF AKEMMRVVDD FNNNMLWFNF KLRVGFNHGP LTAGVIGTTK 660
  661 LLYDIWGDTV NIASRMDTTG VECRIQVSEE SYRVLSKMGY DFDYRGTVNV KGKGQMKTYL 720
  721 YPKCTDNGVV PQHQLSISPD IRVQVDGSIG RSPTDEITNL VPSVQYLDKA SLGSDDGAQT 780
  781 KEATLSSKRP WREPVKAEER FRFGKAIEKE DCEDTGAEEA NELTKLNVSK SV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle