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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109487472
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKHRHLPLV AVFSLLLSGI TMTHAQQQSD VKNGAAADIL FLVDSSWSAG KDRFLLVQEF  60
   61 LSDVVESLSV GDNDFHFALV RLNGNPHTEF LLNAYHSKQE VLSHILNMSY IGESNQTGKG 120
  121 LEYIIHSHLT EASGSRAADG VPQVIVVLTD GQSEEDGFAL PSAELKSADV NVFAVGVEDA 180
  181 DERTLREIAS EPLSMHVFNL ENVTSLHDMV GNLVSCIHSS VNPERAGDKE SLKDITAQDS 240
  241 ADIIFLIDGS QNTGKANFDV IRDFLVNVLE RLSVGNQQVR VGVVQYSDEP RTMFSLDSYP 300
  301 SKAAVLDAVK RLSFAGGELA NIGQALDFVV ENHFTRTGGS RVEEGVPQVL VLISAGPSSD 360
  361 EIRDAVVALK QGSVFSFGLG AQAASRVELQ HIATDDNLVF TVPEFRSFGD LQEQLLPYLV 420
  421 GVAQRHFVLQ PPAIVTQVME VNKRDIVFLV DGSSSLGQAN FNAIRDFISR VIQRLEIGQD 480
  481 LVQVSVAQYA DTVKPEFYLN TYSTKKDAIT TVRKMKALEG SALYTGSALD FVRNNLFTSS 540
  541 AGHRAAEGVP KLLVLITGGK SLDDVSQAAQ ELQKGSIMAL VIGSRAADED ELKEIAFDSS 600
  601 LVFIPAEFRP APLQSMLPSL MAPLRTLTGT TEVHVNKRDI IFLLDGSDNV GKNNFPYVRD 660
  661 FVTNLVNSLD VGSDNIRVGL VQFSDTPVTE FSLDTYQTKS ELLAHLRRLQ LKGGTGLNAG 720
  721 SALSYVHANH FTEAGGSRIR EHVPQLLLLL MAGPSEDVYL QAANALVRSG VLTFCVGTNQ 780
  781 ADKAELERIA FNPSLVYLMD DFSALPALPQ QLIQPLTTYV SGGVQEVPLS QPEVKRDILF 840
  841 LFDGSVNVMG QFPAVRDFLY RIIEELDVKP DGTRVAIAQF SDDVRVESRF NEHQTKAEIL 900
  901 NLVKKMKLKT GKGLNLGLAL DHALRTIFVR SAGSRIEDNV QQFLVLLVAG RSTDAVAGPA 960
  961 SSLKQRGVIP FIFQAKNANP SELEQIVPSP AFILAAESLP KIGDLQSEIV GLLKAKQTSD1020
 1021 TVSGEKDVVF LIDGSEGVRS GFPLLKEFVQ RVVESLDVGP NQVRVALVQY SDRTRPEFYL1080
 1081 NSHMDQQGVI SAIRRLTLLG GPTPNTGAAL DFVLRNILTS STGSRIEEGV PQLLIVLTAE1140
 1141 RSGDDVRGPS VVLKQGGAVP IGIGIGNADI SEMQTISFIP DFAVAIPTFR ELGTIQQVIS1200
 1201 ERVIQLNREQ LSSLTPVLMP SPSAGPGNKK DVVFLIDGSQ NAGAEFQHIR TLIERLVEYL1260
 1261 DIGFDTTRVA VIQFSEDTKM EFPLNAHFSK DEVQNAVRRL RPKGGRQVYI GNALEYVLKN1320
 1321 IFQRPLGSRI EEGVPQFLVL ISSGKSADEV DDSAVELKQF GVAPLTVARH TDQEELVKIS1380
 1381 LSPEYVFSVS TFRELPRLEQ RLLTPITTLT SQQIQQILAS TRYPPSVAES DAADIVFLID1440
 1441 SSDAMKPDGI AHIRDFVSRI VRRLNIGPNK VRIGVVQFSN DVFPEFYLKT HKSQNSVLEA1500
 1501 IRRLRFKGGS PLNTGRALEF VARNLFVKSA GSRIEDGVPQ HLVLFLGGKS QDDVSRHAQV1560
 1561 ISSSGIMSLG IGDRNIDRTD LQTITNDPRL VFTVREFREL PNIEERVMLS FGPSGPTPQP1620
 1621 PEVEFPSSRP EKKKADIVFL LDGSINFRRD SFQEVLRFAS EIVDTVYEDG DSIRVGLVQY1680
 1681 NSDPTDEFFL RDFSTKRQII DAINKVIYKG GRHANTRVGI EHLLKNHFVS EAGSRLDERV1740
 1741 PQIAFVITGG KSVEDAQDVS LALTQKGVKV FAVGVRNIDS EEVGKIASNS ATAFRVGSVQ1800
 1801 ELSELSETVL ETLHDAMHET LCPGVTDVSK ACNLEVILGF DGSRDQNVFV SQKGLESKVD1860
 1861 TILNRISQIQ RISCSSNQLP TVRVSVVANT PSGPVEAFDF AEYQPDLFEK FRTMRSQHPY1920
 1921 VLTADTLKLY QNKFRQSSPD TVKVVIHFTD GADGDMADLY RASEELRQAG VQALILVGLE1980
 1981 RVANLERLMQ VEFGRGFMYD RPLRLNLLDL DYELAEQLDN IAEKACCGVP CKCSGERGDR2040
 2041 GPIGSIGPKG ISGEDGYRGY PGDEGGPGER GPPGVNGTQG FQGCPGQRGV KGSRGFPGEK2100
 2101 GELGEIGLDG LDGEEGDKGL PGSSGEKGSP GRRGDKGPKG DKGERGDVGI RGDPGDSGRD2160
 2161 SQQRGPKGET GDIGPMGLPG RDGIPGSPGD PGKDGGFGRR GPAGAKGNRG GPGQPGFEGE2220
 2221 QGTRGSQGPP GPIGPPGLIG EQGIPGPRGG GGTAGAPGER GRTGPLGRKG EPGEPGPKGG2280
 2281 TGNRGPRGET GDDGRDGVGS EGRRGKKGER GFPGYPGPKG TPGEPGADGP PGPKGIRGRR2340
 2341 GNSGPPGVVG QKGDPGYPGP SGHRGNRGDS VDQCALIQSI RDKCPCCYGP LECPVFPTEL2400
 2401 AFALDTSEGV TQDTFSRMRE VLLSIVGDLT IAESNCPRGA RVAVVTYNNE VTTEIRFADS2460
 2461 KKKSALLDSI QNLQVALTSK QPSLETAMSF VARNTFKRVR NGFLMRKVAI FFSNQPTKPS2520
 2521 LQLREAVLKL SDAGITPLFL TSQEDRELIN ALQINNTAVG HALVLPARRD LRDFLKNVLT2580
 2581 CHVCLDICNI DPSCGFGNWR PSFRDRRAAG SDVDIDLAFI LDSSEATTLF QFNEMKKYIS2640
 2641 YMVRQLDLSP DPKASQHFAR VAVVQQATYE SVDNTSVPPV KVEFSLTDYG AKEKLLDFLS2700
 2701 RRMTQLQGTM DLGNAIEYTI ENIFESAPNP RDLKIVVLML TGEIPREQLE EAQRAILQAK2760
 2761 CKGYFFVVLG IGRKVNVKEV YSFASEPNDV FFKFMDKSTE LNEEPLMRFG RLLPSFVGSG2820
 2821 NAFYLPPDLR KQCDWFQGDQ PVKNGVKFGH RQINTPHTVN SSLTSKVVTT MKPVTTTKPT2880
 2881 SIPAPPQTAA AKPVPVKPAP AQPPVLTKPA AMKPASANKP VAAKPVATNT ATVRPASAVK2940
 2941 PAAASKPAAT RPLPAAVRPV ATKPEAPRPQ AKPAATKPAT TKPMARVSRE VQVSEVTENS3000
 3001 ARLHWERPEP SSSYFYDLTV TSAHDQSLVL RQNLTVTDRV IGGLLAGQLY HVVVVSYLQS3060
 3061 QVRAIYQGSF NTKKTQPPVL QAAHRASSST INLMVNTEPL FLTKTDICKL PKDAGTCEDF3120
 3121 KLLWHYDLES KSCKRFWYGG CGGNENRFHS QEECEKMCSP ELSV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle