YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109486319, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGAWVLLLL LLGLRLQLSF GVIPVEEENP AFWNQKAKEA LDVAKKLKPI RTSAKNLIIF  60
   61 LGDGMGVPTV TATRILKGQL GGHLGPETPL AMDHFPFTAL SKTYNVDRQV PDSAGTATAY 120
  121 LCGVKANYKT IGVSAAARFN QCNSTFGNEV FSVMHRAKKA GKSVGVVTTT SVQHASPAGT 180
  181 YAHTVNCDWY SDAHMATAAL QEGCKDIAMQ LISNMDIDVI LGGGRKFMFP KGTPDPEYSG 240
  241 NRAQSGTRLD GQNLVQKWLA KHQGARYVWN RTELIQASQD SAVTHLMGLF EPNDMKYDIY 300
  301 RDPTQDPSLA EMTEVAVHLL SRNPKGFYLF VEGLGASFNA LDGRPFTSIL YGNGPGYKLE 360
  361 KGTRPDVTDK ESRDPKYRQQ AAVPLSSETH SGEDVAIFAR GPQAHLVHGV QEQNYIAHVM 420
  421 AFAGCLEPYT DCGLAPPAGR SSAVSPGYIS TLLCLLAGTM LMLLVSAEP

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	445	0.99
Transmembrane Helix	446	466	0.83
Cytoplasmic	467	469	0.71