YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109487371, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSHLAFPF LTVPGSIGIM VMLILYNYWF LYIPYLVWCY YDRRTPEQGG RRWSWVQNWT  60
   61 VWKYFMDYFP IHLVKTQDLD PAHNYIFGFH PHGIFVFGAF GNFCTNYSDF KKLFPGFTSY 120
  121 LHVAVSWFWL PLFREYALSN GPVSVSKRSL SHVMSKEGGG NISVIVIGGA KELLESFPGR 180
  181 YSLCLLQRKG FVKIALTHGA HLVPVFSFGE NELYSQVDNP KGSWLRTAQD KVYNLTGLAL 240
  241 PLFYARGIFQ NSFGLMPYRK LIYTVVGRPI PVQKTLHPTP EQIDELHQTY MEELRKLFNE 300
  301 HKGKYGIPEH ETLVFK

Type	Start	End	Confidence
Cytoplasmic	1	7	0.88
Transmembrane Helix	8	30	0.91
Non-Cytoplasmic	31	85	0.95
Transmembrane Helix	86	106	0.85
Cytoplasmic	107	112	0.79
Transmembrane Helix	113	133	0.72
Non-Cytoplasmic	134	316	0.76