YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109487325
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARAPQETQA LAAGSALRLR RALLARDGPP RRHRRRSSSL PAAASVAAFA LKPGAGAPRL  60
   61 TPQPYSPAPD CGRALRMLPP VPSCLGLLLL LLLCPAHVGG LWWAVGSPLV MDPTSICRKA 120
  121 RRLAGRQAEL CQAEPEVVAE LARGARLGVR ECQFQFRFRR WNCSSHSKAF GRVLQQDIRE 180
  181 TAFVFAITAA GASHAVTQAC SMGELLQCGC QAPRGRAPPR PSGLLGTPGP PGPTGSPDAS 240
  241 AAWEWGGCGD DVDFGDEKSR LFMDAQHKRG RGDIRALVQL HNNEAGRLAV RSHTRTECKC 300
  301 HGLSGSCALR TCWQKLPPFR EVGARLLERF HGASRVMGTN DGKALLPAVR TLKPPGRADL 360
  361 LYAADSPDFC APNRRTGSPG TRGRACNSSA PDLSGCDLLC CGRGHRQESV QLEENCLCRF 420
  421 HWCCVVQCHR CRVRKELSLC L

Type	Start	End	Confidence
Cytoplasmic	1	82	0.59
Transmembrane Helix	83	105	0.68
Non-Cytoplasmic	106	441	0.78