YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109486993, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARRRPAAG VGARDALAVL ALALCAPGVG GGALEWYSAT VSIEYVDPQS NLTVWSVTES  60
   61 GRFGDSSLRE ERQGLVGVPR APADAEGCAP DTRFVAPGAL GNAPWVALVA RGGCTFKDKV 120
  121 LAAARRNASA VVVYNQERYG NATEPMSHAG TGSIVVIMIS YPKGREISDL VQKGIPVKMR 180
  181 IEIGTRHMQE FISGQSVVFV AIAFITMMII SLAWLIFYYI QRFLYTGSQF GSQNHRKETK 240
  241 KVIGQLPLHT VKHGEKGIDV DAENCAVCIE NFKVKDVIRI LPCKHIFHRI CIDPWLLDHR 300
  301 TCPMCKLDVI KALGYWGDPE DAQDLPIPEA APGSVSVGNL SVTVQDEERS ESNLPSSSSS 360
  361 EFGPHRPCLK EDAEEDTALL GAGRSDPQHG GSIC

Type	Start	End	Confidence
Signal Peptide	1	31	0.96
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	196	0.97
Transmembrane Helix	197	218	0.94
Cytoplasmic	219	394	0.93