YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109486291
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.98
Transmembrane Helix	62	82	0.88
Non-Cytoplasmic	83	105	0.92
Transmembrane Helix	106	125	0.88
Cytoplasmic	126	132	0.76
Transmembrane Helix	133	154	0.90
Non-Cytoplasmic	155	161	0.72
Transmembrane Helix	162	181	0.93
Cytoplasmic	182	192	0.86
Transmembrane Helix	193	214	0.89
Non-Cytoplasmic	215	221	0.80
Transmembrane Helix	222	243	0.92
Cytoplasmic	244	316	0.99
Transmembrane Helix	317	335	0.84
Non-Cytoplasmic	336	355	0.75
Transmembrane Helix	356	376	0.89
Cytoplasmic	377	385	0.73
Transmembrane Helix	386	406	0.91
Non-Cytoplasmic	407	414	0.67
Transmembrane Helix	415	435	0.88
Cytoplasmic	436	442	0.76
Transmembrane Helix	443	465	0.89
Non-Cytoplasmic	466	477	0.86
Transmembrane Helix	478	499	0.90
Cytoplasmic	500	533	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METRRAFAAF GIRVTSFRDS MTCMQLNNSL TVNQVTALPS QQHHQHQHTG AMNCCRTPPR  60
   61 DSWVYPTVIL CLFGFFSMFR PSESFLIPFL SGPSKNLTST EMTNEILPVW TYSYLAMLPP 120
  121 VFVLTDYLRY KPIIMLHVMA FTICYLFLLF GQSVMLMQTA EFFFGIVSAT EIAYFAYIYS 180
  181 MVSPEHYQKV SSYCRSITLV SYTAGSVLAQ LLVSLMNVPY STLFYISLAC VSVAFFVSLF 240
  241 LPMPKKSMFF HTKPNREACP KPLEPCTVLK EAHNNGAQPE LFANAQNLGD REQDNSALRI 300
  301 FVYWFQDLKE CYSSKHLVYW SLWWAFATAG YNQILNFVQV LWEQKAPSKD SSIYNGAVEA 360
  361 IATFGGALAS FSVGYIKVDW DLLGELGLAV FSAVVAGSLL LMNYTLSIWV CYTGYVLVKS 420
  421 SYSFLITIAV FQIAVNLSLE RYALVFGIDT FIALVIQTIM TMIVADQRGL QLPVTTQFLV 480
  481 YGSYFAVIAG VFLIRSIYIL YSAKCRKEVQ NLATTQSPGE PYLQEPRDVS TKF