YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109486259
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPLDSGGGE IGSCFGMSAP PVPQHSWGTS GGLCPRPEQQ RLPPAASRLR APQETQALAA  60
   61 GSALRLRRAL LARDGPPRRH RRRSSSLPAA ASVAAFALKP GAGAPRLTPQ PYSPAPDCGR 120
  121 ALRMLPPVPS CLGLLLLLLL CPAHVGGLWW AVGSPLVMDP TSICRKARRL AGRQAELCQA 180
  181 EPEVVAELAR GARLGVRECQ FQFRFRRWNC SSHSKAFGRV LQQDIRETAF VFAITAAGAS 240
  241 HAVTQACSMG ELLQCGCQAP RGRAPPRPSG LLGTPGPPGP TGSPDASAAW EWGGCGDDVD 300
  301 FGDEKSRLFM DAQHKRGRGD IRALVQLHNN EAGRLAVRSH TRTECKCHGL SGSCALRTCW 360
  361 QKLPPFREVG ARLLERFHGA SRVMGTNDGK ALLPAVRTLK PPGRADLLYA ADSPDFCAPN 420
  421 RRTGSPGTRG RACNSSAPDL SGCDLLCCGR GHRQESVQLE ENCLCRFHWC CVVQCHRCRV 480
  481 RKELSLCL

Type	Start	End	Confidence
Cytoplasmic	1	129	0.82
Transmembrane Helix	130	153	0.85
Non-Cytoplasmic	154	488	0.72