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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109486847
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.56
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVRNLLIY IFSTYLLVMF GFNAAQDFWC STLVKGVIYG SYSVSEMFPK NFTNCTWTLE  60
   61 NPDPTKYSIY LKFSKKDLSC SNFSLLAYQF DHFSHEKIKD LLRKNHSIMQ LCSSKNAFVF 120
  121 LQYDKNFIQI RRVFPSDFPG LQKKGEEDQK SFFEFLVLNK VSPSQFGCHV LCTWLESCLK 180
  181 SENGRTESCG VMYTKCTCPQ HLGEWGIDDQ SLVLLNNVVL PLNEQTEGCL TQELQTTQVC 240
  241 NLTREAKRPP KEEFGMMGDH TIKSQRPRSV HEKRVPQEQA DAAKFMAQTG ESGVEEWSQW 300
  301 STCSVTCGQG SQVRTRTCVS PYGTHCSGPL RESRVCNNTA LCPVHGVWEE WSPWSLCSFT 360
  361 CGRGQRTRTR SCTPPQYGGR PCEGPETHHK PCNIALCPVD GQWQEWSSWS HCSVTCSNGT 420
  421 QQRSRQCTAA AHGGSECRGP WAESRECYNS ECTANGQWNQ WGHWSGCSKS CDGGWERRVR 480
  481 TCQGVTVTGQ QCEGTSEEIR RCSEQRCPAP YEICPEDVLI SMVWKRTPAG DLAFNQCPLN 540
  541 ATGTTSRRCS LSLHGVASWE QPSFARCISN EYRHLQHSIK EHLAKGQRML AGDGMSQVTK 600
  601 TLLDLTQRKN FYAGDLLVSV EILRNVTDTF KRASYIPASD GVQNFFQIVS NLLDEENKEK 660
  661 WEDAQQIYPG SIELMQVIED FIHIVGMGMM DFQNSYLMTG NVVASIQKLP AASVLTDINF 720
  721 PMKGRKGMVD WARNSEDRVV IPKSIFTPVS SKELDESSVF VLGAVLYKNL DLILPTLRNY 780
  781 TVVNSKIIVV TIRPEPKRTD AFLEIELAHL ANGTLNPYCV LWDDSKSNES LGTWSTQGCK 840
  841 TVLTDASHTK CLCDRLSTFA ILAQQPREIV MESSGTPSVT LIVGSGLSCL ALITLAVVYA 900
  901 ALWRYIRSER SIILINFCLS IISSNILILV GQTQTHNKSI CTTTTAFLHF FFLASFCWVL 960
  961 TEAWQSYMAV TGKIRTRLIR KRFLCLGWGL PALVVATSVG FTRTKGYGTD HYCWLSLEGG1020
 1021 LLYAFVGPAA AVVLVNMVIG ILVFNKLVSR DGILDKKLKH RAGASLWSSC VVLPLLALTW1080
 1081 MSAVLAMTDK RSILFQILFA VFDSLQGFVI VMVHCILRRE VQDAFRCRLR NCQDPINADS1140
 1141 SSSFPNGHAQ IMTDFEKDVD IACRSVLHKD IGPCRAATIT GTLSRISLND EEEEKGTNPE1200
 1201 GLSYSTLPGN VISKVIIQQP TALHMPMSMN ELSNPCLKKE NTELRRTVYL CTDDNLRGAD1260
 1261 MDIVHPQERM MESDYIVMPR SSVSTQPSMK EESKMNIGME TLPHERLLHY KVNPEFNMNP1320
 1321 PVMDQFNMNL DQHLAPQEHM QNLPFEPRTA VKNFMASELD DNAGLSRSET GSTISMSSLE1380
 1381 RRKSRYSDLD FEKVMHTRKR HMELFQELNQ KFQTLDRFRD IPNTSSMENP APNKNPWDTF1440
 1441 KTPSEYPHYT TINVLDTEAK DALELRPAEW EKCLNLPLDV QEGDFQTEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle