YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109486007
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.96
Transmembrane Helix	39	58	0.94
Non-Cytoplasmic	59	66	0.78
Transmembrane Helix	67	87	0.93
Cytoplasmic	88	130	0.95
Transmembrane Helix	131	152	0.94
Non-Cytoplasmic	153	160	0.76
Transmembrane Helix	161	184	0.82
Cytoplasmic	185	194	0.65
Transmembrane Helix	195	212	0.92
Non-Cytoplasmic	213	216	0.60
Transmembrane Helix	217	241	0.64
Cytoplasmic	242	251	0.74
Transmembrane Helix	252	275	0.77
Non-Cytoplasmic	276	281	0.80
Transmembrane Helix	282	303	0.95
Cytoplasmic	304	370	0.91
Transmembrane Helix	371	391	0.88
Non-Cytoplasmic	392	409	0.82
Transmembrane Helix	410	430	0.94
Cytoplasmic	431	438	0.75
Transmembrane Helix	439	458	0.83
Non-Cytoplasmic	459	461	0.53
Transmembrane Helix	462	483	0.58
Cytoplasmic	484	491	0.44
Transmembrane Helix	492	513	0.69
Non-Cytoplasmic	514	525	0.62
Transmembrane Helix	526	550	0.80
Cytoplasmic	551	561	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGYFKILIE TLAFSPGDQK IADLPLTIKR RTRQEQARII GVAFGNLAAG SAARTSICAG  60
   61 ARRSLPLWAW SILGVAAVGA WSAAARLSAP PALRGMALGV RGRGASGQDL TSETPVTATA 120
  121 SSSAVSSRRF LLWLYLVGFL DLFGVSMTVP LLNLHVRSLG VSPVVAGIVG SSYGILQLFS 180
  181 STFVGCWSDV VGRRCSLLVC ILLSALGYLL LGMSTNVFLF TLARVPVGVF KHTLSISRAL 240
  241 LSDLVTEKER PLVLGQFNTA SGVGFILGPV IGGYLTELDG GFYVTAFMCC SVFLLNAGLV 300
  301 WLLPWRETSL NIPDSGWSLD QKHATVTIKS ESTLQGAATT PEARRSGRNL RPPWVEVMST 360
  361 LKDMKNLIFS ALWDVFLVRL LMGVAVMLYY SNFVLALEER FGVRPKTTGY LISYTSALGT 420
  421 LAGFAVGPIL RLYKHNSHMV LLHSSALTCL LLLLYSTTNS MAMVVLSSTL LSFSTTIGRT 480
  481 CITDLQLSVG GAQASGTVIG VGQSVTAVGR ILAPLLSGLA QEISPCGPPS LGAALALVAI 540
  541 LIMTLYRPPF SGDGSERLKR E