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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109485775
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPHLHPALL GPVLTLSLRR QASLMSEEPD RISSVLRECW LGCDSSLVIW KVMAEEALRI  60
   61 LASPAKGERL GAAERLWMAL NPVPAVVAAP LCVRTEASAL PDPAPPTSAS AGAHSAIVFI 120
  121 KEPSSQDALQ GRRALLRCEV EAPDPVHVYW LLNGVPVQDT ERRFAQGSSL SFAAVDRLQD 180
  181 SGAFQCVARD NITGEEARSA NASFNIKWIE AGPVVLKHPA SAAEIQPQTQ VTLRCHIDGH 240
  241 PRPTYQWFRD GTPLSDDQST HTVSSKERNL TLRPASPEHS GLYSCCAHNA FGQACSSQNF 300
  301 TLSIADESFA RVLLAPQDVV VARNEEAMFH CQFSAQPPPS LQWVFEDETP ITNRSRPPHL 360
  361 RKAMVFANGS LLLTQVRPRN AGVYRCIGQG QRGPPIVLEA TLHLAEIEDM LPLEPRVFIA 420
  421 GGEERVACPA PQGLPTPSVW WEHAGVRLPA HGRVHQKGLE LVFATIAESD AGVYTCHAAN 480
  481 LAGQRRQDVN ITVATVPTWL RKPQDSQLEE GKPGYLHCLT QATPKPTVIW YRNQMLISED 540
  541 SRFEVSKNGT LRINSVEVYD GTVYRCVSST PAGSIEAQAR VQVLEKLKFT PPPQPQQCME 600
  601 FDKEATVPCS ATGREKPTVK WVRADGSSLP EWVTDNAGTL HFARVTRDDA GNYTCIASNE 660
  661 PQGQIRAHVQ LTVAVFITFK VEPERTTVYQ GHTALLRCEA QGDPKPLIQW KGKDRILDPT 720
  721 KLGPRMHIFQ NGSLVIHDVA PEDSGSYTCI AGNSCNIRHT EAPLLVVDKP LMEDSEGPGS 780
  781 PPPYKMIQTI GLSVGAAVAY IIAVLGLMFY CKKRCKAKRL QKQPEGEEPE MECLNGGPLQ 840
  841 NGQPSAEIQE EVALTSLGSG PTATNKRHST GDKMHFPRAS LQPISTLGQW TEGIPICPKS 900
  901 NMLETAGSGS LYMGNEIQAQ VLMLAQQQTL PPLRENPLRV STTLSSHTVK PSNSLVKQPP 960
  961 LYSLFWRRXR SLCPGLCSQA VLSRQVALCS QVALGMEHLS NNRFVHKDLA ARNCLVSAQR1020
 1021 QVKVSALGLS KDVYNRNRGL TRDDSSEFGM SMQISLPFGP MGSGGAGSAD QWGGGAGARH1080
 1081 IRSGLAIKGN IVSLYMGGEG LGDASAASAW SRPPPPAVSA AASSPCPAGD ADGRRARLPG1140
 1141 TRTGGAARGL GQPRP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle