YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157822209, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDSDALSI PASWVQMESS TVFDYDKSNL LCDNNVIFFS IIFTIVLYSL VFLLSLVGNS  60
   61 LVLWVLVKYE NLESLTNVFI LNLCLSDLMF SCLLPVLISA QWGWFLGDFF CKFINMIFCI 120
  121 SLYSSIFFLT IMTIHRYMSV VSPISSLGIY TLRCRMLVTT SVWAASILFS IPDTVFHKVI 180
  181 SLKCDFSERH GLLASVYQHN ILFLLSMGII LFCYVQILRT LFRSRSRQRH RTVRLIFTIV 240
  241 VAYFLSWAPY NLVLFLKTEV IQLSCEGRQQ LDFAMIICRN LAFSHCCFNP VLYVFVGVKF 300
  301 RRHLKRLLQQ VWLCPKTSNP VPFSYSPGTF TYEGPSFY

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.88
Transmembrane Helix	44	67	0.87
Cytoplasmic	68	77	0.86
Transmembrane Helix	78	100	0.89
Non-Cytoplasmic	101	112	0.75
Transmembrane Helix	113	134	0.91
Cytoplasmic	135	150	0.84
Transmembrane Helix	151	171	0.85
Non-Cytoplasmic	172	199	0.87
Transmembrane Helix	200	218	0.94
Cytoplasmic	219	231	0.84
Transmembrane Helix	232	253	0.87
Non-Cytoplasmic	254	280	0.86
Transmembrane Helix	281	298	0.84
Cytoplasmic	299	338	0.85