YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109485489
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPSQSRELP ELLCSNIRTS GYARPRALRS HSALLLRVGP RAAFKPELGV HGTRRRKLSP  60
   61 KMDGSTCSGA RGKQENMAGR QRGSGRLWAL GGAALGACLA GVASQLVEPS TAPPKPKPPP 120
  121 LTKETVVFWD MRLWHVVGIF SLFVLSIIIT LCCVFNCRVP RTRKEIEARY LQRKAAKMYT 180
  181 DKLETVPPLN ELTEIPGEDK KKKKKDSVDT VAIKVEEDEK NEAKKKGEK

Type	Start	End	Confidence
Cytoplasmic	1	86	0.98
Transmembrane Helix	87	106	0.94
Non-Cytoplasmic	107	135	0.93
Transmembrane Helix	136	157	0.93
Cytoplasmic	158	229	0.99