YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109485257, gi...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIGKSLELL LPSIAVVTIW NWWDKQNEWR SHCGKRSSQV VSIRTTRADS NELCCLQERL  60
   61 EGLEDMLKEL HLSLSLVLVF ACGLLYQLTL RSQCFFACLP PFTSPQGLEG LLRNGRSIVF 120
  121 IETSERLEPP PLVSCAVESA AKIYQEQPIL FFMKGLSNAT QMTSNTSSYP AFSLLSAINN 180
  181 VFFVPLDMKT LFEDTPLFSW YTKVNSSREK HWLHVSSDAS RLAIIWKYGG VYMDTDVISI 240
  241 RPIPEENFLA AQGSQHSSNG VFGFLPHHPF LWACMENFVE HYNSGIWGNQ GPKLMTRMLK 300
  301 IWCRLKDFQG LGDLKCLNIS FLHPQRFYPI PYPEWRRYYQ VWDRDLSFND SYALHLWNFM 360
  361 NREGKTVVRG SNSLVENLYQ KHCPKTYRVL IQGAEGTVSR KSGKGNR

Type	Start	End	Confidence
Cytoplasmic	1	69	0.61
Transmembrane Helix	70	90	0.61
Non-Cytoplasmic	91	407	0.95