YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109485102
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.72
Transmembrane Helix	21	41	0.93
Cytoplasmic	42	47	0.70
Transmembrane Helix	48	71	0.78
Non-Cytoplasmic	72	132	0.67
Transmembrane Helix	133	150	0.51
Cytoplasmic	151	161	0.47
Transmembrane Helix	162	185	0.91
Non-Cytoplasmic	186	203	0.49
Transmembrane Helix	204	224	0.78
Cytoplasmic	225	232	0.40
Transmembrane Helix	233	256	0.55
Non-Cytoplasmic	257	277	0.67
Transmembrane Helix	278	299	0.89
Cytoplasmic	300	307	0.62
Transmembrane Helix	308	327	0.63
Non-Cytoplasmic	328	328	0.42
Transmembrane Helix	329	349	0.79
Cytoplasmic	350	366	0.60
Transmembrane Helix	367	387	0.74
Non-Cytoplasmic	388	393	0.57
Transmembrane Helix	394	412	0.92
Cytoplasmic	413	428	0.71
Transmembrane Helix	429	450	0.88
Non-Cytoplasmic	451	460	0.72
Transmembrane Helix	461	484	0.83
Cytoplasmic	485	644	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGQLRLTSG KDEDHFQHQG AVELLAFNFL LILTILTIWL FKNHRFRFLH ETGGAMVYGL  60
   61 IMGLILRYAT APTDIDSGTV YNCGKLLFSP STLLVNITDQ VYEYKYQREI NQHNISPHQG 120
  121 NAILEKMTFD PEIFFNVLLP PIIFHAGYSL KKRHFFQNLG SILTYAFLGT AISCVVIGLI 180
  181 MYGFVKAMVH AGQLKSGDFH FTDCLFFGSL MSATDPVTVL AIFHELHVDP DLYTLLFGES 240
  241 VLNDAVAIVL TYSISIYSPK ENPNAFDTAA FFQSVGNFLG IFAGSFAMGS AYAVVTALLT 300
  301 KFTKLREFPM LETGLFFLLS WSAFLSAEAA GLTGIVAVLF CGVTQAHYTY NNLSSDSKLR 360
  361 TKQLFEFMNF LAENVIFCYM GLALFTFQNH IFNALFILGA FLAIFVARAC NIYPLSFLLN 420
  421 LGRKQKIPWN FQHMMMFSGL RGAIAFALAI RNTESQPKQM MFTTTLLLVF FTVWVFGGGT 480
  481 TPMLTWLQIR VGVDLDESLK EEPSSQQEAN KVDKDMTKTE SAQLFRMWYG FDHKYLKPIL 540
  541 THSGPPLTTT LPAWCGPVSR LLTSPQAYGE QLKEDDVECI VNQDELAMNY QEQSPTSSSP 600
  601 ATKLALDQKS SGLTLGKENI YEGDLGLGGY ELKLEQTRGQ PQMD