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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109485046
Protein type: Globular with Signal Peptide
Type Confidence: 0.97
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTGLPRALA ALGVALLLSS IEAEVDPPSD LNFKIIDENT VHMSWERPAD PIVGYRITVD  60
   61 STTDGPTKEF TLAASTTETL LSNLIPETQY VVTITSYDEV EESVPVIGQL TIETGDPAKP 120
  121 GEKKPGKTEI QKCSVSAWTD LVFLVDGSWS VGRNNFKYIL DFIVALVSAF DIGEEKTRVG 180
  181 VVQYSSDTRT EFNLNQYYRR EDLLAAIKKI PYKGGNTMTG DAIDYLVKNT FTESAGSRAG 240
  241 FPKVAIIITD GKSQDEVEIP ARELRNIGVE VFSLGIKAAD AKELKQIAST PSLNHVFNVA 300
  301 NFDAIVDIQN EIISQVCSGV DEQLGELVSG EEVIEPPSNL VVTDLSSKFI RLRWDPSPSA 360
  361 VTGYKILLTP MAAGSRHHAL SVGPQTTTLN VRDLSADTEY QISVFAMKGL TSSEPVSVME 420
  421 KTQPMKVQVE CSRGVDIKAD IVFLVDGSYS IGIANFVKVR AFLEVLAKSF EISPNRVQIS 480
  481 LVQYSRDPHT EFTLKEFNRV EDIIKAINNF PYRGGSTNTG KAMTYVREKI FVPNKGSRSN 540
  541 VPKVMILITD GKSSDAFRDP AIKLRNSDVE IFAVGVKDAV RSELEAIASP PAETHVFTVE 600
  601 DFDAFQRISF ELTQSICLRI EQELAAIKKK AYVPPKDLRF TQVTANSFKA EWSPAGDNVF 660
  661 SYHITYKDTT GDDEVTVVEP ASSTSVVLSN LKPETLYLVN VTAEYEDGFS VPVVGEETTA 720
  721 EVKGAPRNLK VTDETTDSFK ITWSQAPGRV LRYRIMYRPV SGGESKEVST PANQRRKTLE 780
  781 NLTPDTKYEI SVIAEYSSGP GSPLTGSAAT EEVRGNPRDL RVSDATTSTL KLTWSGAPGK 840
  841 VKQYLVTYTP AAGGETQEVT VRGDTTTTVL RNLKEGTQYD LSVTALYASG AGEALSGKGT 900
  901 TLEERGSPQN LVTKDITDTS IGAYWTSAPG MVRGYRVSWK SLYDDIEAGE KTLPGDAIHT 960
  961 MIENLQPETK YKISVFATYS SGEGEPVTGD ATTELSQDSK ILKVDEETEH TMRVTWKAAP1020
 1021 GKVINYRVVY RPQGGGRQMV AKVPPTVTST VLKRLQPQTT YDITVLPMYK TGEGKLRQGS1080
 1081 GTTASRFKSP RNLKTSDPTM SSFRVTWEPA PGEVKGYKVT FHPTGDDRRL GELVLGPYDN1140
 1141 TVVLEELRAG TTYRVNVFGM FDGGESLPLV GQEMTTLSDT TVTPFLSSGM ECLTRAEADI1200
 1201 VLLVDGSWSI GRANFRTVRS FISRIVEVFE IGPKRVQIAL AQYSGDPRTE WHLNAHRDKK1260
 1261 SLLQAVANLP YKGGNTLTGM ALNFIRQQSF KTQAGMRPRA RKIGVLITDG KSQDDVEAPS1320
 1321 KKLKDEGVEL FAIGIKNADE VELKMIATDP DDIHAYNVAD FESLSKIVDD LTINLCNSVK1380
 1381 GPGDLEAPSN LVISERTHRS FRVSWTPPSD SVDRYKVEYY PVSGGKRQEF YVSRLETSTV1440
 1441 LKDLKPETEY VVNVYSVVED EYSEPLKGTE KTLPVPVVSL NIYDIGPTTM HVQWQPVGGA1500
 1501 TGYTVSYQPT RSPEGTKPKE MRVGPTVNDV QLTGLLPNTE YEVTVQAVLH DLTSEPAKAR1560
 1561 EATLPLPRPQ DVKIRDVTHS TMNVIWEPVL GKVRKYTVRY KTPEEEFKEV EVDRSRTSTT1620
 1621 LKDLSSQTQY TVSVSAVYDE GTSPPATAHE TTRPVPAPTN LQFTEVTPES FRGTWDHGAS1680
 1681 DVSLYRITWA PVGNPDKLET ILNGDENTLL FENLDPNTLY DVSITAIYPD ESESEDLSGS1740
 1741 ERTLRLIPLT TQAPKSGPRN LQVYNATSNS LTVKWDPASG RVQKYRITYQ PSTGEGNEQT1800
 1801 TTVGGRQNSV VLQKLKPDSP YTITVSSQYP DGEGGRMTGR GKTKPLNTVR NLRVYDPSTS1860
 1861 TLSVRWDHAE GNPRQYKLFY APAGGPEELV PIPGNTNYAI LRNLQPDTPY TVTVVPVYAE1920
 1921 GDGGRTSDTG RTLVRGLARN VQVYNPTPNS LDVRWDSAPG PVQQYRIVYS PVAGTRPSES1980
 1981 IVVPGNTRTV HLERLIPDTP YSVNIVALYS DGEGNPSPGQ GRTLPRSGPR NLRVFGETTN2040
 2041 SLSVAWDHAD GPVQQYRIIY SPIVGDPIDE YTTVPGRRNN VILQPLQPDT PYKITVIAIY2100
 2101 EDGDGGHLTG NGRTVGLLPP QNMHISDEWY TRFRVSWDPS PSPVLGYKIV YKPVGSNEPM2160
 2161 EAFVGEVTSY TLHNLNPSTT YDVSVYAQYD SGLSVPLTDQ GTTLYLNVTD LKTYQVGWDT2220
 2221 FCVKWSPHRA ATSYRLKLSP ADGTRGQEIT VRGSETSHCF TGLSPEAEYG VTVFVQTPNL2280
 2281 EGPGVPIKEQ TTVKPTEAPT EPPTPSPPPT IPPARDVCKG AKADIVFLTD ASWSIGDDNF2340
 2341 NKVVKFIFNT VGAFDEISPA GIQVSFVQYS DEVKSEFKLN TYNDKALALG ALQNIRYRGG2400
 2401 NTRTGKALTF IKEKVLTWES GMRKNVPKVL VVVTDGRSQD EVKKAAFIIQ QSGFSVFVVG2460
 2461 VADVDYNELA NIASKPSERH VFIVDDFESF EKIEDNLITF VCETATSSCP LVYLDGYTSP2520
 2521 GFKMLEAYNL TEKNFASVQG VSLESGSFPS YSAYRLQKNA FINQPTAELH PNGLPPSYTI2580
 2581 ILLFRLLPET PSDPFAIWQI TDRDYRPQVG VIADPSSKTL SFFNKDTRGE VQTVTFDADE2640
 2641 AKTLFYGSFH KVHIVVTSKS VKIYIDCYEI VEKDIKEAGN ITTDGYEILG KLLKGERKSA2700
 2701 TFQIQSFDII CSPVWTSRDR CCDIPSRRDE AKCPALPNAC TCTQDSVGPP GPPGPAGGPG2760
 2761 AKGPRGERGI NGAVGPPGPR GDTGPPGPQG PPGPQGPNGL SIPGEQGRQG MKGDAGEPGL2820
 2821 PGRTGTPGLP GPPGPMGPPG DRGFTGKDGA MGPRGPPGPP GTPGSPGVTG PSGKPGKPGD2880
 2881 HGRPGQSGLK GEKGDRGDIA SQNMMRAVAR QVCEQLISGQ MSRFNQMLNQ IPNDYHSNRN2940
 2941 QPGPPGPPGP PGSAGARGEP GPGGRPGFPG TPGMQGPQGE RGLPGEKGER GIGSQGPRGP3000
 3001 PGPPGPQGES RTGPPGSTGS RGPPGPPGRP GNSGIRGPPG PPGYCDSSQC ASIPYNGQGY3060
 3061 PGMLMPLFRL TNFLSLQCCL QFEYMRILFL RCLRTCLLEN ESVWKSHGRY G

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle