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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109484843
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.85
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPRGFLVA WTLSLWPGFT DTFNMDTRNP RVIAGPSAAF FGYTVQQHDI SGKKWLVVGA  60
   61 PLETNGHQKT GDVYKCPVTQ GNCTKLNLGR VTLSNVSERK DNMRLGLSLA TNPKDSSFLA 120
  121 CSPLWSHECG SSYYTTGMCS RVNSNFRFSK TVAPALQRCQ TYMDIVIVLD GSNSIYPWVE 180
  181 VQHFLIEILT KFYIGPGQIQ VGIVQYGEDA VHEFHLNDYK SVKDVVEAAS HIEQRGGTET 240
  241 RTAFGIEFAR SEAFQKGGRK GAKKVMIVIT DGESHDSPDL EKVIRQSEKD NVTRYAVAVL 300
  301 GYYNRRGINP ETFLNEIKYI ASDPDDKHFF NVTDEAALKD IVDALGDRIF SLEGTNKNET 360
  361 SFGLEMSQTG FSSHVVEDGV LLGAVGAYDW NGAVLKETSA GKVIPLRESY LKEFPEELKN 420
  421 HAAYLGYTVT SVVSSKQGRV YVAGAPRFNH TGKVILFSIH TNRSLTIHQA LRGEQIGSYF 480
  481 GSEITSVDIN NDRVTDVLLV GAPMYFSEGR ERGKVYVYNL RQNRFVFNGT LKDSHSYQNA 540
  541 RFGSCIASVQ DLNQDSYNDV VVGAPLEDSH RGAIYIFHGF QTNILKKPVQ RISASELAPG 600
  601 LQHFGCSIHG QLDLNEDGLV DLAVGALGNA VVLWARPVVQ INASLHFEPS KINIFHKDCK 660
  661 RNGRDATCLA AFLCFGPIFL APHFHTATVG IRYNATMDER RYMPRAHLDE GADQFTNRAV 720
  721 LLSSGQEHCQ RINFHVLDTA DYVKPVAFSV EYSLEDPDHG PMLDNGWPTT LRVSVPFWNG 780
  781 CNEDEHCVPD LVLDARSDLP TAMEYCQQVL RRPAQDCSSY TLSFDTTVFI IESTRRRVAV 840
  841 EATLENRGEN AYSAVLNISQ SENLQFASLI QKDDSDNSIE CVNEERRLHK KVCNVSYPFF 900
  901 RAKAKVAFRL DFEFSKSVFL HHLQIHLGAG SDSHEQDSTA DDNTALLRFH LKYEADVLFT 960
  961 RSSSLSHFEV KANSSLESYD GIGPPFNCVF KVQNLGFFPI HGVMMKITVP IATRGGNRLL1020
 1021 MLKDFFTDQV NTSCNIWGNS TEYRSTPTEE DLSHAPQRNH SNSDVVSIIC NVRLAPNQET1080
 1081 SFYLVGNLWL MSLKALKYRS MKITVNAALQ RQFHSPFIFR EEDPSRQVTF EISKQEDWQV1140
 1141 PIWIIVGSSL GGLLLLALLV LALWKLGFFK SAKRKREPSL GPVPKELE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle