YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149020624, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.52
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	42	0.90
Transmembrane Helix	43	66	0.86
Cytoplasmic	67	76	0.87
Transmembrane Helix	77	98	0.90
Non-Cytoplasmic	99	116	0.82
Transmembrane Helix	117	140	0.87
Cytoplasmic	141	156	0.89
Transmembrane Helix	157	178	0.89
Non-Cytoplasmic	179	204	0.92
Transmembrane Helix	205	226	0.94
Cytoplasmic	227	248	0.90
Transmembrane Helix	249	274	0.86
Non-Cytoplasmic	275	289	0.91
Transmembrane Helix	290	311	0.90
Cytoplasmic	312	364	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDNSSIANC CAASGLAARP SWPGSAEAEP PETPRAPWVA PMLSTVVIVT TAVDFVGNLL  60
   61 VILSVLRNRK LRNAGNLFVV NLALADLVVA LYPYPLILVA ILHDGWVLGE IHCKASAFVM 120
  121 GLSVIGSVFN ITAIAINRYW CICHSATYHR ACSQWHAPLY ISLIWLLTLV ALVPNFFVGS 180
  181 LEYDPRIYSC TFIQTASTQY TMAVVAIHFL LPIAVVSFCY LRIWILVLQA RRKAKAERKL 240
  241 RLRPSDLRSF LTMFAVFVVF AICWAPLNCI GLAVAINPEA MALQIPEGLF VTSYFLAYFN 300
  301 SCLNAIVYGL LNQNFRREYK RILSALWSTG RCFHDASKCH LTEDLQGPVP PAAMATIPVQ 360
  361 EGAL