YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109478366
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	215	0.93
Transmembrane Helix	216	239	0.84
Non-Cytoplasmic	240	245	0.83
Transmembrane Helix	246	269	0.76
Cytoplasmic	270	289	0.89
Transmembrane Helix	290	312	0.83
Non-Cytoplasmic	313	318	0.74
Transmembrane Helix	319	339	0.91
Cytoplasmic	340	344	0.81
Transmembrane Helix	345	366	0.89
Non-Cytoplasmic	367	377	0.82
Transmembrane Helix	378	397	0.94
Cytoplasmic	398	409	0.70
Transmembrane Helix	410	429	0.89
Non-Cytoplasmic	430	444	0.84
Transmembrane Helix	445	467	0.85
Cytoplasmic	468	503	0.94
Transmembrane Helix	504	525	0.91
Non-Cytoplasmic	526	529	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRRPDDIEN CTEFDLISLG HRKAGLRGTA PGCARGAGLR ERAGRGARQG RGARSAGRAR  60
   61 RPLRPVGAVA GSLERVELGT VAAVAGGERV AGSIPEWPAT MSLGQRLALL AIRLQEPQRV 120
  121 ASFQRLCGGR SARQPKAGED AETEVRGAPG DPRRRPRQSG ADGSPAKPDC CGAPNGVRNG 180
  181 LAAEPGPTGP RRAGSLRRNS LTGEEGELAK VSNLPLYYLF CFGTELGNEL FYIIFFPFWI 240
  241 WNLDPFVGRR LVIIWVLVMY LGQCTKDIIR WPRPASPPVI KLEIFYNSEY SMPSTHAMSG 300
  301 TAIPIAMILL TYGRWQYPLI YGLILIPCWS SLVCLSRIYM GMHSILDVIA GFLYTILILI 360
  361 IFYPLVDLID NFNQTYKYAP LIIIGLHLIL GIFSFTLDTW STSRGDTAEI LGSGAGIACG 420
  421 SHAAYNLGIS LDPSLHTLPL AIPPLTVTLF GKAILRVVIG MLLVLFVRDI MKKVTIPLAC 480
  481 KLFGIPCHDL RQARQHMEVE LPYRYITYGT VGFSITFLIP YIFSFIGIS