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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109483603
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.85
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPRGFLVA WTLSLWPGFT DTFNMDTRNP RVIAGPSAAF FGYTVQQHDI SGKKWXVLSA  60
   61 ELRKAGSQQA SNVYELTLXP KACVHTSCTQ ITLGRVTLSN VSERKDNMRL GLSLATNPKD 120
  121 SSFLACSPLW SHECGSSYYT TGMCSRVNSN FRFSKTVAPA LQRCQTYMDI VIVLDGSNSI 180
  181 YPWVEVQHFL IEILTKFYIG PGQIQVGIVQ YGEDAVHEFH LNDYKSVKDV VEAASHIEQR 240
  241 GGTETRTAFG IEFARSEAFQ KGGRKGAKKV MIVITDGESH DSPDLEKVIR QSEKDNVTRY 300
  301 AVAVLGYYNR RGINPETFLN EIKYIASDPD DKHFFNVTDE AALKDIVDAL GDRIFSLEGT 360
  361 NKNETSFGLE MSQTGFSSHV VEDGVLLGAV GAYDWNGAVL KETSAGKVIP LRESYLKEFP 420
  421 EELKNHAAYL GYTVTSVVSS KQGRVYVAGA PRFNHTGKVI LFSIHTNRSL TIHQALRGEQ 480
  481 IGSYFGSEIT SVDINNDRVT DVLLVGAPMY FSEGRERGKV YVYNLRQNRF VFNGTLKDSH 540
  541 SYQNARFGSC IASVQDLNQD SYNDVVVGAP LEDSHRGAIY IFHGFQTNIL KKPVQRISAS 600
  601 ELAPGLQHFG CSIHGQLDLN EDGLVDLAVG ALGNAVVLWA RPVVQINASL HFEPSKINIF 660
  661 HKDCKRNGRD ATCLAAFLCF GPIFLAPHFH TATVGIRYNA TMDERRYMPR AHLDEGADQF 720
  721 TNRAVLLSSG QEHCQRINFH VLDTADYVKP VAFSVEYSLE DPDHGPMLDN GWPTTLRVSV 780
  781 PFWNGCNEDE HCVPDLVLDA RSDLPTAMEY CQQVLRRPAQ DCSSYTLSFD TTVFIIESTR 840
  841 RRVAVEATLE NRGENAYSAV LNISQSENLQ FASLIQKDDS DNSIECVNEE RRLHKKVCNV 900
  901 SYPFFRAKAK VAFRLDFEFS KSVFLHHLQI HLGAGSDSHE QDSTADDNTA LLRFHLKYEA 960
  961 DVLFTRSSSL SHFEVKANSS LESYDGIGPP FNCVFKVQNL GFFPIHGVMM KITVPIATRG1020
 1021 GNRLLMLKDF FTDQVNTSCN IWGNSTEYRS TPTEEDLSHA PQRNHSNSDV VSIICNVRLA1080
 1081 PNQETSFYLV GNLWLMSLKA LKYRSMKITV NAALQRQFHS PFIFREEDPS RQVTFEISKQ1140
 1141 EDWQVPIWII VGSSLGGLLL LALLVLALWK LGFFKSAKRK REPSLGPVPK ELE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle