YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109483266
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	159	0.93
Transmembrane Helix	160	181	0.92
Non-Cytoplasmic	182	223	0.92
Transmembrane Helix	224	246	0.87
Cytoplasmic	247	257	0.71
Transmembrane Helix	258	277	0.94
Non-Cytoplasmic	278	283	0.83
Transmembrane Helix	284	302	0.94
Cytoplasmic	303	312	0.67
Transmembrane Helix	313	330	0.84
Non-Cytoplasmic	331	350	0.74
Transmembrane Helix	351	371	0.86
Cytoplasmic	372	378	0.85
Transmembrane Helix	379	400	0.92
Non-Cytoplasmic	401	409	0.75
Transmembrane Helix	410	429	0.92
Cytoplasmic	430	439	0.93
Transmembrane Helix	440	463	0.88
Non-Cytoplasmic	464	503	0.93
Transmembrane Helix	504	523	0.90
Cytoplasmic	524	530	0.74
Transmembrane Helix	531	551	0.72
Non-Cytoplasmic	552	552	0.31
Transmembrane Helix	553	576	0.70
Cytoplasmic	577	598	0.54
Transmembrane Helix	599	621	0.81
Non-Cytoplasmic	622	848	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVISSSTSN EEQGDLQSNF SGGGRPTSAF STYFRFCSCD RGTVSTPSHH GFFLVCRPTR  60
   61 HFSALNQTVQ STLSPRVSLP RVGLSQLVVI DRGQPMRSGQ GGGPWLLSGL GAPLNGWQGE 120
  121 QSGFRRSIRG VFEYSQLLPF DVKMTKLGFL RLSYEKQDTL LKLLILSMAA VLSFSTRLFA 180
  181 VLRFESVIHE FDPYFNYRTT RFLAEEGFYK FHNWFDDRAW YPLGRIIGGT IYPGLMITSA 240
  241 AIYHVLHFFH ITIDIRNVCV FLAPLFSSFT TIVTYHLTKE LKDAGAGLLA AAMIAVVPGY 300
  301 ISRSVAGSYD NEGIAIFCML LTYYMWIKAV KTGSIYWAAK CALAYFYMVS SWGGYVFLIN 360
  361 LIPLHVLVLM LTGRFSHRIY VAYCTVYCLG TILSMQISFV GFQPVLSSEH MAAFGVFGLC 420
  421 QIHAFVDYLR SKLNPQQFEV LFRSVISLVG FVLLTVGALL MLTGKISPWT GRFYSLLDPS 480
  481 YAKNNIPIIA SVSEHQPTTW SSYYFDLQLL VFMFPVGLYY CFSNLSDARI FIIMYGVTSM 540
  541 YFSAVMVRLM LVLAPVMCIL SGIGVSQVLS TYMKNLDISR PDKKSKKQQD STYPIKNEVA 600
  601 SGMILVMAFF LITYTFHSTW VTSEAYSSPS IVLSARGGDG SRIIFDDFRE AYYWLRHNTP 660
  661 EDAKVMSWWD YGYQITAMAN RTILVDNNTW NNTHISRVGQ AMASTEEKAY EIMRELDVSY 720
  721 VLVIFGGLTG YSSDDINKFL WMVRIGGSTE TGRHIKENDY YTPTGEFRVD REGSPVLLNC 780
  781 LMYKMCYYRF GQVYTEAKRP PGFDRVRNAE IGNKDFELDV LEEAYTTEHW LVRIYKVKDL 840
  841 DNRGLSRT