YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109482976
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVGTSMDVS LGMNMGVSMS VSMGMNMGVR FQELQLAAGR HGDDLKHTRN EISELTRLIQ  60
   61 RLRSEIESVK KQCSNLETAI ADAEQRGDCA LKDAQAKLDD LERALHQAKE ELARMLREHQ 120
  121 ELMSMKLALD IEIATYRKLL EGEECRMSGE HTNAVSISVI SSSTTGAVGA GTSFGFSNPS 180
  181 TYGYRPSSVA GGYGILSGGC VTGSGNCSPR GDTKTRLGSA SEFKEVSGKT LALGSPSKKT 240
  241 MR

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.59
Transmembrane Helix	11	29	0.49
Cytoplasmic	30	153	0.60
Transmembrane Helix	154	174	0.49
Non-Cytoplasmic	175	242	0.53