YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109481253, gi...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQLYDHSSS NVNLELQSPA GLVCDWRICL GEIGSSRHCN VHSDGSGKPN GRSAAAAIMK  60
   61 ACVPLIVAML CGLTWAGNLE SCASRCNERF NRDAVCQCDR RCPQHDDCCD DYEHLCTDEE 120
  121 GPPEPKALLD PEDEIPASYL YSSPSSCQGR CRETYDKHHP CHCNDRCLEF GNCCEDFGNL 180
  181 CGDHEGFSHS SDAITKEELK SISETIYRVD INKAQKKDIV LNSQNQISPA ETGNQVDRCP 240
  241 EPLFKYVNEK LFSKPTYAAF INLLNNYQRA TGHGEHFSAQ QLEEQVVFLR EVMKTAVMKE 300
  301 LYSFLRHQNR YGSQQEFVED LKNMWFGLYS RGNEEGDSSG FEHVFSGEVK KGKVTGFHNW 360
  361 IRFYLQEKEG LLDYYSHNYD GPWDSYPDVL AMQFNWDGYY KEVGSVFIGS SPEFEFALYS 420
  421 LCFITRPGKK CHLSLGGYPL AIQTYTWDKT TYGNGKKYIA TAYVVSSTQ

Type	Start	End	Confidence
Cytoplasmic	1	55	0.70
Transmembrane Helix	56	77	0.66
Non-Cytoplasmic	78	469	0.99