YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109482583, gi...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDPERRWSL SFAGCGFLGF YHIGATLCLS ERAPHILREA RTFFGCSAGA LHAVTFVCSL  60
   61 PLDHIMEILM DLVRKARSRN IGTLHPFFNI NKCVRDGLQE TLPDNVHQII SGKVYISLTR 120
  121 VSDGENVLVS EFHSKDEVVD ALVCSCFIPL FSGLIPPSFR GERYVDGGVS DNVPVLDAKT 180
  181 TITVSPFYGE HDICPKVKST NFLQVNITNL SLRLCTGNLH LLTRALFPSD VKVMGELCFQ 240
  241 GYLDAFRFLE ENGICNGPQR SLSLSLEKEM APETMIPCLE NGHLVAGNKV PVSCVCLTAV 300
  301 PSDESIWEML SPKLSTALTE AIKDRGGYLN KVCNLLPIRI LSYILLPCTL PVESAIAAVH 360
  361 RLVMWLPDIH EDIQWLQWAT SQVCARMTMC LLPSTRSRAS KDNHQTLKHG YHPSLHKPQG 420
  421 SSAGL

Type	Start	End	Confidence
Cytoplasmic	1	7	0.55
Transmembrane Helix	8	29	0.82
Non-Cytoplasmic	30	425	0.70