YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109482565
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELALGSCS AEPKRTKSAR EGRARAYPGA QGPRRVWAAS GRYIPRRSPA GGFRGAGFGV  60
   61 QAPPARDVDS DPGGRCGSRG LRAVPRRSLR NFQLCPASRA GYRPGGSIVG PRFGSWGPGA 120
  121 QGAPLPSVTH SPATLSLFGS EVSGIVATSR LLLGPRCCVP VPPLLPQGYG TWSLRSGPCP 180
  181 GSASPRAASS AGCVLLCRCP SHSRVPPPPP SAFQALFGPR DSCEAETINQ VISETSQVIS 240
  241 EFNRTREGGA RASSRCASCP ARRRRDVGSA ASWLLSHAEP PRHVTARPRV RAAGARDRGG 300
  301 AAPAWGTARR GDGDVAAPRA PESSLGSSAR HGVGAAGRTM NVFRILGDLS HLLAMILLLG 360
  361 DVLTVSCSPC TGISGKSQIL FALVFTTRYL DLFSNFISIY NTVMKVVFLL CAYVTVYMIY 420
  421 WKFRKTFDIE NDTFRLEFLV VPVTGLSFLV NYSYAPMEIL WTFSIYLESV AILPQLFMIS 480
  481 KTGEAETITT HYLFFLGLYR LLYLANWIRR YQTENFYDQI SVVSGVVQTI FYCDFFYLYV 540
  541 TKVLKGKKLS LPMPV

Type	Start	End	Confidence
Cytoplasmic	1	348	0.59
Transmembrane Helix	349	373	0.57
Non-Cytoplasmic	374	401	0.76
Transmembrane Helix	402	421	0.92
Cytoplasmic	422	432	0.89
Transmembrane Helix	433	455	0.81
Non-Cytoplasmic	456	458	0.80
Transmembrane Helix	459	479	0.70
Cytoplasmic	480	487	0.66
Transmembrane Helix	488	508	0.80
Non-Cytoplasmic	509	519	0.64
Transmembrane Helix	520	540	0.66
Cytoplasmic	541	555	0.80