YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109482353, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.61
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSALGMLAA GGAGLAVALH SAVSASDLEL HPPSYPWSHR GLLSSLDHTS IRRGFQVYKQ  60
   61 VCSSCHSMDY VAYRHLVGVC YTEEEAKALA EEVEVQDGPN EDGNMFMRPG KLSDYFPKPY 120
  121 PNPEAARAAN NGALPPDLSY IVRARHGGED YVFSLLTGYC EPPTGVSLRE GLYFNPYFPG 180
  181 QAIGMAPPIY TEVLEYDDGT PATMSQVAKD VATFLRWASE PEHDHRKRMG LKMLLMMGLL 240
  241 LPLTYAMKRH KWSVLKSRKL AYRPPK

Type	Start	End	Confidence
Signal Peptide	1	25	0.98
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	228	0.99
Transmembrane Helix	229	247	0.59
Cytoplasmic	248	266	0.58