YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109481950, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALENLLWV LLITIIFIII IIRIERETIP NPEQSQTRSS ELRLGFAGLQ QPGTGVSPSL  60
   61 LKPGIPPASL KNMDMTDSCQ FSPSEYFYDG SCIPSPEDEF GDQFEPRVAA FGAHKAKLQG 120
  121 SDDEEHVRAP TGHHQAGHCL MWACKACKRK STTMDRRKAA TMRERRRLKK VNQAFETLKR 180
  181 CTTTNPNQRL PKVEILRNAI RYIESLQELL REQVENYYSL PGQSCSQPTS PTSNCSDGMP 240
  241 ECNSPVWSRK NSSFDSIYCP DVSNACASDK SSLSSLDCLS SIVDRITSAE PSELALQDTA 300
  301 SLSPAASTNS QPATPGSSSS RLIYHVL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.86
Transmembrane Helix	7	24	0.95
Non-Cytoplasmic	25	327	0.92