YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109481791
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	156	0.87
Transmembrane Helix	157	180	0.87
Non-Cytoplasmic	181	191	0.63
Transmembrane Helix	192	209	0.70
Cytoplasmic	210	244	0.82
Transmembrane Helix	245	264	0.94
Non-Cytoplasmic	265	274	0.75
Transmembrane Helix	275	302	0.79
Cytoplasmic	303	312	0.84
Transmembrane Helix	313	334	0.91
Non-Cytoplasmic	335	344	0.76
Transmembrane Helix	345	366	0.94
Cytoplasmic	367	377	0.80
Transmembrane Helix	378	397	0.90
Non-Cytoplasmic	398	405	0.71
Transmembrane Helix	406	426	0.81
Cytoplasmic	427	467	0.81
Transmembrane Helix	468	488	0.91
Non-Cytoplasmic	489	495	0.75
Transmembrane Helix	496	519	0.91
Cytoplasmic	520	537	0.79
Transmembrane Helix	538	561	0.89
Non-Cytoplasmic	562	572	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHSKGRPAT YKTSASPESG GGFVDWTLNL NTIQSDKFLN LLLSMVPVIY QKNQEDRHKK  60
   61 VNGIWQDGLS GAAQTFSKRS EPHLDYHEFS EQAFHSGGGH TPASCSPRYD DYAGYNYCDG 120
  121 REASETTAML QDEDPSSQGD DVIVETSQRL PKESSGVMAL QILVPFLLAG FGTVSAGMVL 180
  181 DIVQHWEVFK NVTEVFILVP ALLGLKGNLE MTLASRLSTA VNVGKMDSPI EKWNLIIGNL 240
  241 ALKQVQATVV GFLAAVAAII LGWIPEGKYY LSHSILLCSS SVATAFIASL LQGIIMVGVI 300
  301 VGSKKTGINP DNVATPIAAS FGDLITLAIL AWISQGLYSC LETYYYISPL VCAFFLALTP 360
  361 IWIIIAAKHP ATRTVLHSGW EPVITAMVIS SIGGLILDTT VSDPNLVGIV VYTPVINGIG 420
  421 GNLVAIQASR ISTYLHLHSL PGELPEEPKG CSYPFRTFFG SGVNNKSAQV LLLFVIPGHL 480
  481 IFLYTIHLMK SGHTSLTVVF VVVYLLAAVL QVFTLLWIAD WMVHRFWRKG KDPDSFSIPY 540
  541 LTALGDLLGT ALLALSFHFL WLIGDRDGDV GD