YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109481685
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNRTVTTFI LLGLTDDIRL QIPLFMFLIL SYMWSLSGNL TIITLTLIDP HLKTPMYIFL  60
   61 KNFSFLEISL TTACIPRFLY SISSGDKSIT YIACASQLLF IDLFAVTEFF LLAIMSYDRY 120
  121 VAICKPLHYM TIMNSRVCKN FIFFCWVAAL IIILPPIGLG LGLEFCDSNI IDHFCCDAAP 180
  181 LLNISCSDTL LIEQMVIVGA VLTFIITFVC VVLSYVYIIK T

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.54
Transmembrane Helix	21	48	0.77
Cytoplasmic	49	57	0.54
Transmembrane Helix	58	80	0.59
Non-Cytoplasmic	81	97	0.68
Transmembrane Helix	98	117	0.80
Cytoplasmic	118	139	0.84
Transmembrane Helix	140	159	0.93
Non-Cytoplasmic	160	196	0.88
Transmembrane Helix	197	219	0.93
Cytoplasmic	220	221	0.95