YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109481610
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XGGGGGAAPV RGPRGPNLNP NPLINVRDRL FHALFFKMAV TYSRLFPPAF RRLFEFFVLL  60
   61 KALFVLFVLA YIHIVFSRSP INCLEHVRDR WPREGVLRVE VRHNSSRAPV ILQFCDGGLG 120
  121 GLDLEPGGLE LEEEELSVEM FTNSSIKFEL DIEPKVFKPP GGADALNDSQ DFPFPETPAK 180
  181 AWPQDEYIVE YSLEYGFLRL SQATRQRLSI PVMVVTLDPT REQCFGDRFS RLLLDEFLGY 240
  241 DDVLMSSVKG LAENEENKGF LRNVVSGEHY RFVSMWMART SYLAAFVIMV IFTLSVSMLL 300
  301 RYSHHQIFVF IVDLLQMLEM NMAIAFPAAP LLTVILALVG MEAIMSEFFN DTTTAFYIIL 360
  361 IVWLADQYDA ICCHTNTSKR HWLRFFYLYH FAFYAYHYRF NGQYSSLALV TSWLFIQHSM 420
  421 IYFFHHYELP AILQQIRIQE MLLQTPPLGP GTPTALPDDL NNNSGSPATP DPSPPLALGP 480
  481 SSSPAPTGGA SGPGSLGAGA SVSGSDLGWV AETAAIISDA SFLSGLSASL LERRPAAPSA 540
  541 PDSARPDPGA SLEDAPAPAG S

Type	Start	End	Confidence
Cytoplasmic	1	52	0.78
Transmembrane Helix	53	75	0.87
Non-Cytoplasmic	76	280	0.74
Transmembrane Helix	281	302	0.92
Cytoplasmic	303	321	0.66
Transmembrane Helix	322	344	0.87
Non-Cytoplasmic	345	352	0.61
Transmembrane Helix	353	372	0.67
Cytoplasmic	373	381	0.68
Transmembrane Helix	382	398	0.60
Non-Cytoplasmic	399	405	0.51
Transmembrane Helix	406	427	0.70
Cytoplasmic	428	561	0.65