YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109481491
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSGLRKNG SLSFCSEFTL VALSSLAELQ PVLFLVFLVT YLFTVGGNLT IICVIWVTRS  60
   61 LHTPMYFFLA NLSFLEMCYI SSVVPQMLVH LLVQIKTISV RGCAVQMYIF TILGLTECCL 120
  121 LATMAYDRFV AICHPLHYTL RMGPSACLKL AGASWMTGIL VESAQTTWIF TLPFCGAGT

Type	Start	End	Confidence
Cytoplasmic	1	9	0.79
Transmembrane Helix	10	27	0.73
Non-Cytoplasmic	28	33	0.59
Transmembrane Helix	34	57	0.88
Cytoplasmic	58	66	0.72
Transmembrane Helix	67	89	0.84
Non-Cytoplasmic	90	106	0.73
Transmembrane Helix	107	126	0.90
Cytoplasmic	127	145	0.75
Transmembrane Helix	146	169	0.70
Non-Cytoplasmic	170	179	0.74