YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109481118, gi...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.79
Transmembrane Helix	11	29	0.79
Non-Cytoplasmic	30	67	0.93
Transmembrane Helix	68	88	0.93
Cytoplasmic	89	97	0.80
Transmembrane Helix	98	115	0.97
Non-Cytoplasmic	116	122	0.78
Transmembrane Helix	123	142	0.94
Cytoplasmic	143	148	0.76
Transmembrane Helix	149	168	0.90
Non-Cytoplasmic	169	177	0.68
Transmembrane Helix	178	201	0.88
Cytoplasmic	202	209	0.93
Transmembrane Helix	210	233	0.85
Non-Cytoplasmic	234	261	0.92
Transmembrane Helix	262	282	0.91
Cytoplasmic	283	288	0.81
Transmembrane Helix	289	307	0.90
Non-Cytoplasmic	308	312	0.85
Transmembrane Helix	313	333	0.85
Cytoplasmic	334	343	0.82
Transmembrane Helix	344	366	0.77
Non-Cytoplasmic	367	488	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKKSSGRQ SLLPLGLLVT VAAIHLVACP YTKVEESFNL QATHDLLYHQ LDIDKYDHHE  60
   61 FPGVVPRTFL GPLLIAAFSS PVVYVLSLLE VSRFYSQLIV RGVLGLGVIF GLWTLQKAVR 120
  121 QQFGATVAVM FCWISATQFH LMFYCTRTLP NVLALAVVLP ALTAWLQHRW AVFVWLSAFV 180
  181 IIGFRAELAM LLGIMLLLTL YQRRMSVARL LQHAIPAGIL CLGLTVAVDS YFWRYLVWPE 240
  241 GVVLWYNTVL NKSSNWGTSP LLWYFYSALP RGLGCSLLFI PLGAVDRRTF ALALPSLGFV 300
  301 ALYSLLPHKE LRFIIYTFPV LNIMAARGCT YVLNKKSWPY KVRALLVFGH VVVNVASTAT 360
  361 SLYVSHFNYP GGVAMQRLHE LVPPQTDVLV HIDVAAAQTG VSRFLQVNDD WRYDKREDVQ 420
  421 LGAAGMLDYT HIIMEAVPGH LALYRDTHRV LARIEATTGV SLNLMKVPPF DVSLQTKLVL 480
  481 LERLLRPA