YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109480710
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDPERPEAA RPEEGECQSL LNDNKFTRYS SFSGSNLPVN PAFFGDLTEE KQLCPETKEN  60
   61 EVRSNEEPLL RKSSRRFVIF PIQYPDIWKM YKQAQASFWT AEEKNLNESV YHWERSSTKQ 120
  121 NHCFGFWSYS KIYCSEVVER FSQEVQVPEA RCFYGFQILI ENVHSEMYSL LIDTYIRDPK 180
  181 KREFLFNAIE TMPYVKKKAD WALRWIADRK STFGERVVAF AAVEGIFFSG SFAAIFWLKK 240
  241 RGLMPGLTFS NELISRDEGL HCDFACLMFQ YLVNKPSEER VMEIIVDAVK IEQEFLTEAL 300
  301 PVGLIGMNCV LMKQYIEFVA DRLLGELGFS KIFQAENPFD FMENISLEGK TNFFEKRVSE 360
  361 YQRFAVMAET TDNVFTLDAD F

Type	Start	End	Confidence
Non-Cytoplasmic	1	216	0.66
Transmembrane Helix	217	238	0.75
Cytoplasmic	239	381	0.47