YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109480449
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.90
Transmembrane Helix	15	35	0.94
Cytoplasmic	36	51	0.85
Transmembrane Helix	52	74	0.86
Non-Cytoplasmic	75	83	0.78
Transmembrane Helix	84	108	0.86
Cytoplasmic	109	128	0.85
Transmembrane Helix	129	151	0.90
Non-Cytoplasmic	152	159	0.83
Transmembrane Helix	160	180	0.91
Cytoplasmic	181	189	0.69
Transmembrane Helix	190	210	0.89
Non-Cytoplasmic	211	239	0.91
Transmembrane Helix	240	259	0.97
Cytoplasmic	260	279	0.93
Transmembrane Helix	280	302	0.96
Non-Cytoplasmic	303	341	0.93
Transmembrane Helix	342	363	0.88
Cytoplasmic	364	382	0.88
Transmembrane Helix	383	403	0.92
Non-Cytoplasmic	404	411	0.61
Transmembrane Helix	412	434	0.88
Cytoplasmic	435	439	0.76
Transmembrane Helix	440	463	0.86
Non-Cytoplasmic	464	520	0.97
Transmembrane Helix	521	544	0.90
Cytoplasmic	545	611	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASRDIGSF VVWDYVVFAG MLLISAAIGI YYAFAGGGQQ TSKDFLMGGR SMSAVPVALS  60
   61 LTASFMSAVT VLGTPAEVYR FGAIFSIFGV TYFFVVVISA EVFLPVFYRL GITSTYEYLE 120
  121 LRFNRFIRLC GTVLFIVQTI LYTGIVIYAP ALALNQVTGF DLWGAVVATG VVCTFYCTLG 180
  181 GLKAVVWTDV FQVGIMVAGF ASVIIQASIT QGGINTILSD ASNGGRLNFW NFNPNPLQRH 240
  241 TFWTIIVGGT FTWTTIYGVN QSQVQRYISC KSRLHAKLSL YVNLVGLWVI LICSVFCGLA 300
  301 LYSRYHDCDP WTSKKVSEVD QLMPYLVLDI LKNYPGVPGL FVACAYSGTL STVSSSINAL 360
  361 AAVTVEDLIK PRFKSLSEKS LSWISQGMSV LYGALCIGMA AVASLMGALL QAALSIFGMV 420
  421 GGPLLGLFSL GILVPFANSV GAFAGLLAGF AVSLWVGIGA QLYPPLPERT LPLSLETHGC 480
  481 NSTHNGTDWM STTEMPFSTS AFQIHDVERS ALMDNWYSLS YLYFSTIGTL TTLLVGILIS 540
  541 LATGGRKQNL DPRFLLTKQD FLSNFDVFKK KTHVLNYKMH PVEDGGTDNP AFNHVELNFP 600
  601 DHSGKINGTR L