YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109480300
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHEQRNVPE QMKLRCWADS FFLSAASSLP MVMDSIIQAL EELEQKVLVT EAGVTASAWI  60
   61 LSAKNYSSHN SLHQHLLLKA PSQNTTEPDT HSLSPELQAL ISEVAQHDVR DGQEYGVVLA 120
  121 PDGSTVAVKP LLVGLEAGLQ GRSVANLSSD CLDTCDTGAI WPGLKDAFTN VSSPDAGATL 180
  181 PNDKAKTPTT VDRLLAVTLA GDLGLTFLHR SQTWSPPGLG IEGCWDQLSA PRVFTLLDHK 240
  241 ASRLTMAFLN GALDGALLGA HLSRIPKPHP PLSRLLREYY GAGVDGDPAF RSNFRRQNGV 300
  301 ALTSAPTLAQ QVWEALVLLQ KLEPGHPRLQ NMSQKQLAQV ATFATKEFTE AFLGKDFPLV 360
  361 PHR

Type	Start	End	Confidence
Cytoplasmic	1	15	0.63
Transmembrane Helix	16	37	0.54
Non-Cytoplasmic	38	363	0.94