YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109478393
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIWDLPDSS LLLNRIILER GRSDSLRDRK TPKSEPRNLE MNHAMSMWSV VQEPSQLLSA  60
   61 PEREEPRVNR SCQELEPEKD PPAKLRVEAA ETATKAVDKM LVILVLLTSF FSILYLATPS 120
  121 IRKFFAGGVC TTKVQIPGKV VVITGANTGI GKETARELAR RGARVYIACR DVLKGESAAS 180
  181 EIRADTKNSQ VLVRKLDLSD TKSIRTFAEG FLAEEKKLHI LINNAGVMMC PYSKTVDGFE 240
  241 THFGVNHLGH FLLTYLLLGR LKESAPARVI NLSSVAHLGG KIRFHDLQSK KRYCSGFAYS 300
  301 HSKLANVLFT RELAKRLQGT GVTAYVVHPG CVLSEITRHS FLMCLLWRLF SPFFKSPWQG 360
  361 AQTSLHCALE EGLEPLSGKY FSDCKRTWVS PRARNKKTAE RLWNVSCELL GIQWE

Type	Start	End	Confidence
Cytoplasmic	1	99	0.75
Transmembrane Helix	100	117	0.75
Non-Cytoplasmic	118	415	0.95