YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109477790, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAGPPEVI RAAQKDEYYL GGLRSAAGGA LHSLAGAKKW LEWRKEIELL SDIAYFGLTT  60
   61 IAGYQTLGEE YVGIIQVDPS RQRVPSRLRR GVLVALHAVL PYLLDKALLP LEQELQAEGD 120
  121 GTRASQGSLL PGGRSRSGAR RWVRHHAATL TEQQRRALQR AVFILRQGFA CLHRLHVAWF 180
  181 YIHGTFYHLA KRLAGITYLR TRRLPGEDLR ACTSYRLLGL ISLLHLALSL GLQLYSFRQK 240
  241 QRARKEWRLH RNLSHRRSSL EDRAVCRAPL CTLCLEERRH STATPCGHLF CWECITEWCN 300
  301 TKTECPLCRE KFPPQKLVYL RHYR

Type	Start	End	Confidence
Cytoplasmic	1	162	0.72
Transmembrane Helix	163	183	0.56
Non-Cytoplasmic	184	214	0.74
Transmembrane Helix	215	237	0.82
Cytoplasmic	238	324	0.72