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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109475725, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.80
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVESWFC LCAVLLVPAA AVYEDQVGKF DWRQQYVGKL KFASLEFSPG SKKLVVATEK  60
   61 NVIAALNSRT GEILWRHVDK GTAEGAVDAM LVHGQDAITV SNGGRIMRSW ETNIGGLNWE 120
  121 ITLDSGSFQA LGLVGLQETV RYVAVLKKTT LTLHHLSSGH LKWVEHLPES DSILYQMVYS 180
  181 YGSGVVWALG IVPFSHVNIV KFNVEDGEIV QQVRVWTPWL QHLTGACGVV DEAVLVCPDP 240
  241 SSHSLHTLAL ETEWELRQIP LQSPDLEFGS GFQPQVLPTQ PSPVAPSRAQ FFLQLSPGHY 300
  301 ALLHYHHGAV TLLKNFPQAT LVSFATTGEK TVAAVMTCRT EVQKPGSAGD GSVASFPETS 360
  361 GAQDSLACFN QTYTINLYLV ETGRRLLDTS ISFSLEQKGT RPEQLYVQVF LKKDDSVGYR 420
  421 ALVQTQDHLQ LFLQQLAGKV VLWSREESLA EVVCLEMVDL PLTGAQAELE GEFGKKADGL 480
  481 LGMFLKRLSS QLILLQAWTS HLWKMFYDAR KPRSQIKNEI NIDTLARDEF NLQKMMVMVT 540
  541 ASGKLFGIES SSGTILWKQY LPNVKPDSSF KLMVQRTTAH FPHPPQCTLL VKDKETGMSS 600
  601 LFVFNPIFGK WSQVAPPVLK RPILQSLLLP VMDQDYAKVL LLVDDEYKVT AFPATRNVLR 660
  661 QLHELAPSIF FYLVDAEQGR LSGYRLRKDL TTELSWELII PPEVQRVVQV KGKRSSEHVH 720
  721 SQGRVMGDRS VLYKSLNPNL LAVVTESTDV HHERTFIGIF LIDGVTGRII HSSVQKKARG 780
  781 PVHLVHSENW VVYQYWNSKA RRNELTALEL YEGTEQYNAT AFSSLDRPQL PQVLQQSYIF 840
  841 PSSISAMEAT ITERGITSRH LLIGLPSGAI LSLPKALLDP RRPEIPTEQS REENLIPYSP 900
  901 DVQVHAERFI NYNQTVSRMR GIYTAPSGLE STCLVVAYGL DIYQTRVYPS KQFDVLKDDY 960
  961 DYVLISSVLF GLVFATMITK RLAQVKLLNR AWR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle