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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149061788, gi...
Protein type: Transmembrane
Type Confidence: 0.69
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEEAFLRRR FSLCPPASTP QKTDPRKLPR NLLLGCENEL GPITPGRDME SNGPSQPRDE  60
   61 EPLTPGSATK VPLAEYRLCN GSDKECTSPT TRVSKKDTLK AQKENYRQEK KRATKQLFSA 120
  121 LTDPSVVIMA DSLKIRGTLK SWTKLWCVLK PGVLLIYKTP KVGQWVGTVL LHCCELIERP 180
  181 SKKDGFCFKL FHPLDQSVWA VKGPKGETVG SITQPLPSSY LIFRAASESD GRCWLDALEL 240
  241 ALRCSSLLRL STCKQGRDGE QGSSPDASPS SLYGLPTSAT IPDQDLFPLN GSALENDAFS 300
  301 DKSERENADD SDAETQDHSR KTNESGSDLL DSPGGPRRGT TYVEQVQEEL GELDETSQVE 360
  361 TVSEENKSLM WVLLRQLRPG MDLSRVVLPT FVLEPRSFLS KLSDYYYHGD LLSRAAAEDD 420
  421 PYCRIKLVLR WYLSGFYKKP KGIKKPYNPI LGETFRCCWL HPQTNSHTFY IAEQVSHHPP 480
  481 VSAFYVSNRK DGFCMSGSIT AKSKFYGNSL SALLDGKAKL TFLNRKEEYT LTMPYAHCRG 540
  541 LLYGTMTMEL GGKVTIQCEK NNLQAELDFK LKPFFGSSTS INQISGKITS GEEVLARLTG 600
  601 HWDRDVFIKE EASGGTKLFW TPSEEVRRQR LKRHTVLLEE QSELESERLW QHVTRAIHEG 660
  661 DQHKATQEKS VLEEAQRQRA REHQQSLTPW KPQLFTLDPL TQEWRYQYED YSPWDPLKDI 720
  721 AQYEQDGILH TLQRETMSGQ TAFLGSPESR HKRPSSDRRL RKASDQPSGH SQVTESSGST 780
  781 PESCPDLSDE DFVPGNESPC PRCRREVHRL RMLQEAVLSI QEAQQELHRH LSAMLRSTVR 840
  841 AGQAPAPGLL QNPRSWFLLC IFLTCQLFIN YILK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle