YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109477462
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKHKWWHQ VDAIDVQHGG FKKKTYELMG RHEEQVLINR RDVMEKKDAW DVQEFITQMY  60
   61 IKQLLRHPAF QLLLAFLLVT NAITIALRTN SYLGQKHYEL FSTIDDIVLT ILICEVLLGW 120
  121 LNGFWIFWKD GWNILNFAIV FILFMGFFIK QLNETFITYP LRALRLVHVC MAVEPLARII 180
  181 RVILQSMPDL ANVMALILFF MLVFSVFGVT LFGAFVPKHF QNMGVALYTL FICITQDGWL 240
  241 DIYMDFQVEE REYAMEVGGA IYFAIFITLG AFIGLNLFVV VVTTNLEQMM KTGEEEGHLQ 300
  301 PITFNEKDAE EEDWTDELPL VHCTEARKET SAVPQEPLVG GPLRNLSEKT CDNFCLVLEA 360
  361 IQENLLEYKE IRDELNTIME EVRSIRYNQE QENVIMHKRT SKSMTFPSES SADIREMANK 420
  421 QDLITALVDR EKPELDEACV GPSTIKRRAS QARPPTGTDM GTHWFLLLLL LLSGDRTFNL 480
  481 PGNLRVSIPA SQ

Type	Start	End	Confidence
Cytoplasmic	1	68	0.85
Transmembrane Helix	69	87	0.94
Non-Cytoplasmic	88	106	0.71
Transmembrane Helix	107	126	0.86
Cytoplasmic	127	131	0.66
Transmembrane Helix	132	152	0.89
Non-Cytoplasmic	153	192	0.58
Transmembrane Helix	193	216	0.90
Cytoplasmic	217	223	0.53
Transmembrane Helix	224	240	0.75
Non-Cytoplasmic	241	259	0.77
Transmembrane Helix	260	282	0.93
Cytoplasmic	283	459	0.83
Transmembrane Helix	460	474	0.47
Non-Cytoplasmic	475	492	0.53