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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109475562, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPACPLLLS VILSLRLATA FDPAPSACSA LASGVLYGAF SLQDLFPTIA SGCSWTLENP  60
   61 DPTKYSLYLR FNRQEQVCTH FAPRLLPLDH YLVNFTCLRP GPEEATARAE SEVGRPEEEA 120
  121 EAEAAATGLE LCGGSGPFTF LHFDKNFVQL CLSAEPSEAP RLLAPAALAF RFVEVLLINN 180
  181 NNSSQFTCGV LCRWSEECGR AAGRACGFAQ PGCSCPGEAG ASPATTTPPG PPAAHTLSNA 240
  241 LVPGGPAPPA EADLHSGSSN DLFTTEMRYG EEPEEEPKVK TQWPRSADEP GLYMAQTGDP 300
  301 AAEEWSPWSV CSLTCGQGLQ VRTRSCVSSP YGTLCSGPLR ETRPCNNSAT CPVHGVWEEW 360
  361 GSWSLCSRSC GRGSRSRMRT CVPPQHGGKA CEGPELQTKL CSMAACPVEG QWLEWGPWGP 420
  421 CSSSCANGTQ QRSRKCSVAG PAWATCAGAL TDTRECSNFD CPATDGKWGP WNAWSLCSKT 480
  481 CDTGWQRRFR MCQASGTQGY PCEGTGEEVK PCSEKRCPAF HEMCRDEYVM LMTWKRAAAG 540
  541 EIIYNKCPPN ASGSASRRCL LSAQGVAYWG LPSFARCISH EYRYLYLSLR EHLAKGQRML 600
  601 AGEGMSQVVR SLQELLARRT YYSGDLLFSV DILRNVTDTF KRATYVPSAD DVQRFFQVVS 660
  661 FMVDSENKDK WDDAQQVSPG SVHLLRVVED FIHLVGDALK AFQSSLIVTD NLVISIQREP 720
  721 ISAVSSDITF PMRGRRGMKD WVRHSEDRLF LPKEVLSLSS PGKPATPGAA TAGSPGRGRG 780
  781 PGTVPPGPGP AHQRLLPADP EESSSYFVIG AVLYRTLGLI LPPPRPPLAV TSRVMTVTVR 840
  841 PPTQPPAEPL ITVELSYIIN GTTDPHCASW DYSRADASLG DWNTESCQTL ETQAAHTRCQ 900
  901 CQHLSTFAVL AQPPKDLTLE LAGAPSVPLV IGCAVSCMAL LTLLAIYAAF WRFIKSERSI 960
  961 ILLNFCLSIL ASNILILVGQ SRVLSKGVCT MTAAFLHFFF LSSFCWVLTE AWQSYLAVIG1020
 1021 RMRTRLVRKR FLCLGWGLPA LVVAVSVGFT RTKGYGTSSY CWLSLEGGLL YAFVGPAAVI1080
 1081 VLVNMLIGII VFNKLMARDG VSDKSKKQRA GLLSWNLWGS GSELCLFPKL PRASLWSSCV1140
 1141 VLPLLALTWM SAVLAMTDRR SVLFQALFAV FNSAQGFVIT AVHCFLRREV QDVVKCQMGV1200
 1201 CRTDESEDSP DSCKNGQLQI LSDFEKDVDL ACQTVLFKEV NTCNPSTITG TLSRLSLDED1260
 1261 EEPKSCLVGP EGGLSFSPLP GNILVPMAAS PGLGEPPPPQ ETNPVYMCGE GGLRQLDLTW1320
 1321 LRPSEPGSEG DYMVLPRRTL SLQPGGGGTG GEEAPRARPE GTPRRAAKTV AHTEGYPSFL1380
 1381 SVEHSGLGLG PAYGSLQNPY GMTFQPPPPT PSARQVPEPG ERSRTMPRTV PGSTMKLGSL1440
 1441 ERKKLRYSDL DFEKVMHTRK RHSELYHELN QKFHTFDRYR SQSSAKEKPS PPGGRPGLSQ1500
 1501 HRRHQSWSTF KSMTLGSLPP KPRERLALHR TAAWEPTEPP DGDFQTEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle