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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109477225
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEREVSGT CPKRRGDKRR ESKRGGWAQR PSPNEVFIAE GVFTPQEVAL LPKSLEGCGQ  60
   61 IRISPPIVHL GDPVLASCTI SPNCSKLDRQ PKILWRLQDE PNQPGDRQHH LPDGSQESII 120
  121 TLPHLNYTQA FLFCLVPWNN SFQVLDQAEL RAGYPPASPS NLSCLMYLTT NSLVCQWEPG 180
  181 PETHLPTSFI LKSFRSRTGC QYQGGTILDC MPKKRHSNCS IPRKHLLLYQ NMVIWVQAEN 240
  241 MLGSSESPKL CIDPMDVVKL EPPMLQALDI GHDIVSRQPG CLWLSWKPWK PSEFMEQECE 300
  301 LRYQPQLEGA NWTLVSHLPS STDRFELCSL HQAPVYTLQL RCIRSSLPGL WSSWSPGLQL 360
  361 RPTIKAPTIR LDTWWQKKHL DPETVRMQLF WKPTPLQKDS GQIQGYLLSW SCPDGQGRIM 420
  421 HLCNTTELSC TFHLPSEAQN VTLVAYNSAG TSSPTLVVFL EHEGPAVTSL HAMAQDLGSI 480
  481 WVDWEAPSLL PQGYLIEWGP DSHKYSNNSW RIEPNGNTTG ILLEDNIHPF QLYRITVAPL 540
  541 YPGTVGPPVN VYTYSGEKAL PHAPELYLKH VGRTWAQLEW VPETPWLGMI PLTNYTIFWT 600
  601 DARDHSFSVT LNISFHDFVL DHLKPASLYH VYLMATSRAG STNSTGLTLM TMALDSSDVN 660
  661 IFLGILCFVL LSITCATAWF CCKQSRKTFF WPNVPDPAHS SLSAWVPTIM TEETFQLPSF 720
  721 WGSSVPSITK ITELEEDKKP THWDPSESSG TGSLPAVVQA YVLQGDPREI SNQFQPPSST 780
  781 NDQVLYGQVL GSPTSPEVVG YLRCDSTQPL LGGPTPSPKS YENIWFHSRP QETFIPQPPS 840
  841 QEDDCVFGPP FDFPLFQGLQ VHGVEEQGGF 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle