YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109476932
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.91
Transmembrane Helix	33	56	0.87
Cytoplasmic	57	73	0.88
Transmembrane Helix	74	97	0.86
Non-Cytoplasmic	98	114	0.70
Transmembrane Helix	115	136	0.91
Cytoplasmic	137	148	0.83
Transmembrane Helix	149	168	0.83
Non-Cytoplasmic	169	184	0.64
Transmembrane Helix	185	205	0.89
Cytoplasmic	206	212	0.62
Transmembrane Helix	213	231	0.90
Non-Cytoplasmic	232	276	0.93
Transmembrane Helix	277	296	0.92
Cytoplasmic	297	314	0.83
Transmembrane Helix	315	337	0.83
Non-Cytoplasmic	338	383	0.93
Transmembrane Helix	384	406	0.90
Cytoplasmic	407	425	0.89
Transmembrane Helix	426	447	0.94
Non-Cytoplasmic	448	458	0.88
Transmembrane Helix	459	480	0.90
Cytoplasmic	481	486	0.91
Transmembrane Helix	487	505	0.94
Non-Cytoplasmic	506	528	0.90
Transmembrane Helix	529	551	0.94
Cytoplasmic	552	663	0.99
Transmembrane Helix	664	686	0.87
Non-Cytoplasmic	687	688	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKELAAMEP GASRDGLRAE TTHQALGSGV SLHTYDIVVV VIYFVFVLAV GIWSSIRASR  60
   61 GTIGGYFLAG RSMTWWPIGA SLMSSNVGSG LFIGLAGTGA AGGLAVGGFE WNATFLLLAL 120
  121 GWIFVPVYIA AGVVTMPQYL KKRFGGQRIQ VYMSVLSLIL YIFTKISTDI FSGALFIQMA 180
  181 LGWNLYLSTV ILLVVTAVYT IAGGLTAVIY TDALQTVIMV GGALVLMFLG FREVGWYPGL 240
  241 QQLYRQSIPN VTVPNTTCHL PRSDAFHMLR DPVNGDIPWP GLIFGLTVLA TWCWCTDQVI 300
  301 VQRSLSAKSL SHAKGGSVLG GYLKILPMFF IVMPGMISRA LYPDEVACVD PDICQRVCGA 360
  361 RVGCSNIAYP KLVMALMPVG LRGLMIAVIM AALMSSLTSI FNSSSTLFAI DVWQRVRRQA 420
  421 SEQELMVVGR LFVVFLVLIS ILWIPIIQSS NSGQLFDYIQ SITSYLAPPI TALFLLAIFC 480
  481 KRVTEPGAFW GLMFGLVVGI LRMILEFSYS APACGEKDRR PAVLKDFHYL YFALLLCGLT 540
  541 AIIIVIISFF TEPIPDEKLA RLTWWTRSCP ISELQKKVSV SVNNTESDNS PALAGRPVME 600
  601 GTAGDEEEAN TTSEPEQPEV LHRSWGKWLW NWFCGLSGTP QQALSPAEKA ELEQKLTSIE 660
  661 EEPLWRCVCN INAIILLAIN IFLWGYFA