YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109476858
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPNTVAPKV RSLAVANHHA PVKGEAPAKS STHRDEEELG MAPAETLTVF LKLLAAGFYG  60
   61 VSSFLIVVVN KSVLTNYRFP SSLCVGLGQM VATVAVLWVG KALRVVKFPD FDRNVPRKTF 120
  121 PLPLLYFGNQ ITGLFSTKKL NLPMFTVLRR FSILFTMFAE GALLKKTFSW GIKMTVFAMI 180
  181 IGAFIAASSD LAFDLEGYVF ILINDVLTAA NGAYVKQKLD SKELGKYGLL YYNALFMILP 240
  241 TLAIAYFTGD AQKAMEFEGW ADALFLLQFT LSCVMGFILM YATVLCTQYN SALTTTIVGC 300
  301 IKNILITYIG MVFGGDYIFT WTNFIGLNIS IAGSLVYSYI TFTEEQLSKQ SETSNKLDTK 360
  361 GKGAV

Type	Start	End	Confidence
Cytoplasmic	1	48	0.85
Transmembrane Helix	49	69	0.92
Non-Cytoplasmic	70	78	0.70
Transmembrane Helix	79	100	0.88
Cytoplasmic	101	169	0.71
Transmembrane Helix	170	189	0.89
Non-Cytoplasmic	190	196	0.66
Transmembrane Helix	197	215	0.76
Cytoplasmic	216	227	0.79
Transmembrane Helix	228	248	0.93
Non-Cytoplasmic	249	263	0.78
Transmembrane Helix	264	285	0.92
Cytoplasmic	286	291	0.74
Transmembrane Helix	292	312	0.84
Non-Cytoplasmic	313	318	0.62
Transmembrane Helix	319	341	0.84
Cytoplasmic	342	365	0.83