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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109476790, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.58
Topology Confidence: 0.34
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRPRRRGTR PPPLALLAAL LLAARGAAAQ ETELSVSAEL VPTSSWNTSS EIDKDSYLTL  60
   61 DEPMNNITTS LGQTAELHCK VSGNPPPNIR WFKNDAPVVQ EPRRISFRAT NYGSRLRIRN 120
  121 LDTTDTGYFQ CVATSGKKVV STTGVLFVKF GPPPTASPGS SDEYEEDGFC QPYRGIACAR 180
  181 FIGNRTVYME SLHMQGEIEN QITAAFTMIG TSSHLSDKCS QFAIPSLCHY AFPYCDETSS 240
  241 VPKPRDLCRD ECEVLENVLC HTEYIFARSN PMILMRLKLP NCEDLPQPES PEAANCIRIG 300
  301 IPMADPINKN HKCYNSTGVD YRGTVSVTKS GRQCQPWNSQ YPHTHSFTAL RFPELNGGHS 360
  361 YCRNPGNQKE APWCFTLDEN FKSDLCDIPA CDSKDSKEKN KMEILYILVP SVAIPLAIAF 420
  421 LFFFICVCRN NQKSPSPPVQ RQPKPVRGQN VEMSMLNAYK PKSKAKELPL SAVRFMEELG 480
  481 ECTFGKIYKG HLYLPGMDHA QLVAIKTLKD YNNPQQWTEF QQEASLMAEL HHPNIVCLLG 540
  541 AVTQEQPVCM LFEYMNQGDL HEFLIMRSPH SDVGCSSDED GTVKSSLDHG DFLHIAIQIA 600
  601 AGMEYLSSHF FVHKDLAARN ILIGEQLHVK ISDLGLSREI YSADYYRVQS KSSLPIRWMP 660
  661 PEAIMYGKFS SDSDIWSFGV VLWEIFSFGL QPYYGFSNQE VIEMVRKRQL LPCSEDCPPR 720
  721 MYSLMTECWN EIPSRRPRFK DIHVRLRSWE GLSSHTSSTT PSGGNATTQT TSLSASPVSN 780
  781 LSNPRFPNYM FPSQGIPPQG QIAGFIGPAI PQNQRFIPIN GYPIPPGYAA FPAAHYQPAG 840
  841 PPRVIQHCPP PKSRSPSSAS GSTSTGHVAS LPSSGSNQEA NVPLLPHMSI PNHPGGMGIT 900
  901 VFGNKSQKPY KIDSKQPSLL GDSNIHGHTE SMISAEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle