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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149044501, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLAGLVLC GVSLLLYGLV EGAMDLILIN SLPLVSDAET SLTCIASGWH PHEPITIGRD  60
   61 FEALMNQHQD PLEVTQDVTR EWAKKVVWKR EKASKINGAY FCEGRVRGQA IRIRTMKMRQ 120
  121 QASFLPATLT MTVDRGDNVN ISFKKVLIKE EDAVIYKNGS FIHSVPRHEV PDILEVHLPH 180
  181 AQPQDAGVYS ARYIGGNLFT SAFTRLIVRR CEAQKWGPDC NRPCTTCKNN GVCHEDTGEC 240
  241 ICPPGFMGRT CEKACEPHTF GRTCKERCSG SEGCKSYVFC LPDPYGCSCA TGWRGLQCNE 300
  301 ACPYGHYGPD CKLRCHCTNE EMCDRFQGCL CSQGWQGLQC EKEGRPRMTP QIEDLPDHIE 360
  361 VNSGKFNPIC KASGWPLPTS EEMTLVKPDG TVLQPNDFNH TDHFSVAIFT VNRILPPDSG 420
  421 VWVCSVNTVA GMVEKPFNIS VKVLPEPLHA PNVIDTGHNF AIINISSEPY FGDGPIKSKK 480
  481 LFYKPVNQAW KYIQVMNEIV TLNYLEPRTD YELCVQLVRP GEGGEGHPGP VRRFTTASIG 540
  541 LPPPRGLSLL PKSQTALNLT WQPIFTSSED EFYVEVERWS QQTRSDQQNI KVPGNLTSVL 600
  601 LNNLLPREQY SVRARVNTKA QGEWSEELRA WTLSDILPPQ PENIKITNIT DYTALVSWTI 660
  661 VDGYSISSII IRYKVQGKNE DQHIDVKIKN ATITQYQLKG LEPETTYHVD IFAENNIGSS 720
  721 NPAFSQEIRT LPAPKDLGGG KMLLIAILGS AGMTCITVLL AFLIMLQLKR ANVQRRMAQA 780
  781 FQNVREEPAV QFNSGTLALN RKAKNNPDPT IYPVLDWNDI KFQDVIGEGN FGQVLKARIK 840
  841 KDGLRMDAAI KRMKEYASKD DHRDFAGELE VLCKLGHHPN IINLLGACEH RGYLYLAIEY 900
  901 APHGNLLDFL RKSRVLETDP AFAIANSTAS TLSSQQLLHF AADVARGMDY LSQKQFIHRD 960
  961 LAARNILVGE NYIAKIADFG LSRGQEVYVK KTMGRLPVRW MAIESLNYSV YTTNSDVWSY1020
 1021 GVLLWEIVSL GGTPYCGMTC AELYEKLPQG YRLEKPLNCD DEVYDLMRQC WREKPYERPS1080
 1081 FAQILVSLNR MLEERKTYVN TTLYEKFTYA GIDCSAEEAA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle