YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|121722562, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVQPVHTVS WDTPVSCMAS LGLSPWVPLL TPAPTVQLLL LLLLLVSAHP QSLSGMQGVP  60
   61 SLGESSSGED DLGVEDLPSE EDTPGEADPP GGEDPPEVNS KARKEDSLAL EDLPTPEAPE 120
  121 NRQGSHRDEK GGGHSLWSYG GTLLWPQVSP ACAGRFQSPV DIRLELTSFC RTLQPLELLG 180
  181 YELQSLPELS LCNNGHTVQL TLPPGLKMVL GPGQEYRALQ LHLHWGTSDH PGSEHTVNGH 240
  241 RFPAEIHVVH LSTAFSELHE ALGRPGGLAV LAAFLQESPE ENSAYEQLLS HLEEIAEEGS 300
  301 KIEIPGLDVS ALLPSDLSRY YRYEGSLTTP PCSQGVIWTV FNETVKLSAK QLHTLSVSLW 360
  361 GLRDSRLQLN FRATQPLNGR TIEASFPAVA DSSPEPVHVN SCLSAGDILA LVFGLLFAAT 420
  421 SIAFLLQLRR QHRHRSGTKD GVTYSPAEMT ETGA

Type	Start	End	Confidence
Signal Peptide	1	50	0.56
N-region	1	41
H-region	42	47
C-region	48	50
Cleavage Site	50	51
Non-Cytoplasmic	51	404	0.98
Transmembrane Helix	405	426	0.93
Cytoplasmic	427	454	0.95