YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109474835, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	51	0.88
Non-Cytoplasmic	52	341	0.98
Transmembrane Helix	342	361	0.52
Cytoplasmic	362	481	0.58
Transmembrane Helix	482	505	0.86
Non-Cytoplasmic	506	508	0.50
Transmembrane Helix	509	532	0.83
Cytoplasmic	533	540	0.48
Transmembrane Helix	541	562	0.91
Non-Cytoplasmic	563	569	0.55
Transmembrane Helix	570	591	0.72
Cytoplasmic	592	602	0.44
Transmembrane Helix	603	621	0.88
Non-Cytoplasmic	622	646	0.64
Transmembrane Helix	647	668	0.83
Cytoplasmic	669	697	0.62
Transmembrane Helix	698	719	0.93
Non-Cytoplasmic	720	732	0.60
Transmembrane Helix	733	753	0.94
Cytoplasmic	754	765	0.56
Transmembrane Helix	766	791	0.77
Non-Cytoplasmic	792	858	0.65
Transmembrane Helix	859	881	0.88
Cytoplasmic	882	887	0.57
Transmembrane Helix	888	910	0.85
Non-Cytoplasmic	911	916	0.53
Transmembrane Helix	917	936	0.79
Cytoplasmic	937	944	0.47
Transmembrane Helix	945	967	0.53
Non-Cytoplasmic	968	973	0.71
Transmembrane Helix	974	995	0.91
Cytoplasmic	996	1044	0.93
Transmembrane Helix	1045	1066	0.90
Non-Cytoplasmic	1067	1080	0.81
Transmembrane Helix	1081	1104	0.88
Cytoplasmic	1105	1121	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTSVVPDCK HCRRTSGRES RMQKISVLLF LAWVCFLFYA GIALFTSGFL LTRLELTNQS  60
   61 SCQEPPGPGS LPWGSQGKPG ACWMPSRFSR VVLVLIDALR FDFAQPQCSH VPGEPPVSVP 120
  121 FLGKLGSLKR ILEVQPHHAR LYQSQVDPPT TTMQRLKALT TGSLPTFIDA GSNFASHAIV 180
  181 EDNLIKQLTS AGKRVVFMGD DTWKDLFPGA FSQAFFFSSF NVRDLHTVDN GILEHLYPTM 240
  241 DSGAWDVLIA HFLGVDHCGH KHGPHHPEMA KKLSQMDQVI QGLIERLEND TLLVVAGDHG 300
  301 MTMNGDHGGD SELEVSAALF LYSPTVLFPS VPPEEPEVIP QISLVPTLAL LLGLPIPFGN 360
  361 IGEVMAELFS GGSGGGSSRG DGDASHPDSP ALAQVSALYI NAQQVSRFLH TYSAATQDLH 420
  421 VKELRRLQEL FSKASARYQH LLQHPREAEA ALSSLTADFQ QFLRGARAVC IESWARFSLV 480
  481 RMAGGAALLA AACLLCLLAS QLAVAPGFLF RPLLLIPVAW GLTWTLLYAG VSVTTGSKLD 540
  541 PVVLGAVAAA GSLLPFLWKA WLSWGSKRPL APLLPVPRPV LALLLIRLAT FFSDSFVVAE 600
  601 ARATPFLLGS LILFLVAQLH WEGQLLPPKL LTTSRLGSSA PTAPPRHSGT HALLLGIGLL 660
  661 LFTRLAGLFH RCPEETPACR SSPWLSPLAS MVGGRAKNLW YGACVGALVA LLAAVRLWLR 720
  721 RYGNLKSPEP PVLFVRWGLP LMVLGTAAYW ALASGAEEVP PRLRALVAGA SAVLPRAVMG 780
  781 LAASGLMLLL WRPVTVLVKA GAATSRTRTI LTPFSGPPTS QADLDYVVPQ IYRHMQEEFQ 840
  841 GRLERTRAQG PITVAAYQLG SVYSAAMVTA LILLAFPLLL LHVERVSLVF LLLFLQSFLL 900
  901 LHLLAAGTPV ATPGPFTVMW QAVSAWVLLA TQTFYSTGHQ PVFSAIHWHA AFVGFPDGHG 960
  961 SSTWLPALLV GANTFASHLL FAVGCPLLLL WPFLCERQGP KKRQSLPGSE SEARVRPEEE1020
 1021 QEEPLMEMRL RDAPHHFNAA LLQLGLKYLF VLGAQILACA LAASILRRHL MVWKVFAPKF1080
 1081 IFEAIGFIVS SVGLLLGIAL VMRVDGAVSS WFKKLVLAQQ R