YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149045798, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAAAGLVKP ARLMKVFVTG PLPAQGRAAL AQATDCEVEQ WNSDDPIPSK DLEQGVAGAY  60
   61 GLLCRLSDRV DKKLLDAAGA NLRVISTLSV GVDHLALDEI KKRGIRVGYT PGVLTDATAE 120
  121 LAVSLLLTTC RRLPEAIEEV KNGGWSSWSP LWMCGYGLSE STVGIVGLGR IGQAIARRLK 180
  181 PFGVQRFLYT GRQPRPQEAA EFQAEFVPIA QLAAESDFIV VSCSLTPATR GLCNKDFFQK 240
  241 MKNTAVFINI SRGDVVNQED LYQALASGQI AAAGLDVTTP EPLPPSHPLL TLKNCVILPH 300
  301 IGSATYKTRN TMSLLAANNL LAGLRGEPMP SELKL

Type	Start	End	Confidence
Signal Peptide	1	31	0.83
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	335	0.97