YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109476169
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.83
Transmembrane Helix	74	94	0.81
Non-Cytoplasmic	95	141	0.66
Transmembrane Helix	142	164	0.85
Cytoplasmic	165	171	0.64
Transmembrane Helix	172	195	0.86
Non-Cytoplasmic	196	238	0.68
Transmembrane Helix	239	258	0.85
Cytoplasmic	259	270	0.80
Transmembrane Helix	271	292	0.69
Non-Cytoplasmic	293	317	0.70
Transmembrane Helix	318	341	0.84
Cytoplasmic	342	357	0.66
Transmembrane Helix	358	381	0.70
Non-Cytoplasmic	382	389	0.41
Transmembrane Helix	390	411	0.85
Cytoplasmic	412	414	0.39
Transmembrane Helix	415	436	0.87
Non-Cytoplasmic	437	455	0.49
Transmembrane Helix	456	484	0.86
Cytoplasmic	485	670	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGAKRKKRS VLWGKMHTPH REDIKQWCKR RLPILEWAPQ YNLKENLLPD TVSGVLLAVQ  60
   61 QVTQGLSFAI LSSVHPVFGL YGSLFPAIIY AIFGMGRHVA TGTFALTSLI SANAVERLVP 120
  121 QSNRNLTTQS NSSVLGLSEF ELQRIGVAAA VSFLGGVIQL APFCCRSASE LFLLTWPIXV 180
  181 AMLLSGSPFS MSHVLQSQVG QLAHLTLTYV LGFEVSFLSG KSKFSFFYIY AYVFENIKSV 240
  241 QLEALLLSLL SIVVLVLVKE LNEQFKRKIK VVLPVDLVLI IAASFACYCT NMENTYGLEV 300
  301 VGRIPKGIPP PRAPPMNILS AVLTEAFGVA LVGYVASLAL AQGSAKKFKY SVDDNQEFLA 360
  361 HGLSNVIPSF LFCIPSAAAM GRTAGLYSTG AKTQVACLIS CIFVLIVIYA IGPLLYWLPM 420
  421 CVLASIIVVG LKGMLIQFRD LKKYWNVDKI DWGIWISTYI FTICFAANVG LLFGVVCTIA 480
  481 IVLGRFPRAK TLSITDMKEM ELKVKTETYD ENSQQIKIIS INNPLVFLNA KKFSADLMKI 540
  541 ILKETDGSQA LDDVSKCEQN TLLSPLPNGS CTEEASQPCP SEKYSLVLNC SGLTFFDYTG 600
  601 VSTLVELYLD CKSRSVDVFL ANCTASLIKA MTYYGDLDTE KPIFFDSVAT AISVIQSNKN 660
  661 LSKDTDHSEV